MirGeneDB 2.1
MirGeneDB ID

Dsi-Mir-978-v2

Family name MIR-978 (all species)
Seed UGUCCAG
Species Fruit fly (Drosophila simulans)
MiRBase ID dsi-mir-978a
Paralogues Dsi-Mir-978-v1 
Orthologues Dan-Mir-978-v2  Dme-Mir-978-v2  Dya-Mir-978 
Node of Origin (locus) D. melanogaster group
Node of Origin (family) D. melanogaster group
Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel)		 X: 18333232-18333292 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-978-v2)		 Mir-972 X: 18322964-18323019 [+] UCSC Ensembl
Mir-9369 X: 18323144-18323204 [+] UCSC Ensembl
Mir-973 X: 18323323-18323387 [+] UCSC Ensembl
Mir-974 X: 18323461-18323522 [+] UCSC Ensembl
Mir-975 X: 18330806-18330866 [+] UCSC Ensembl
Mir-976 X: 18330933-18330991 [+] UCSC Ensembl
Mir-977 X: 18331071-18331133 [+] UCSC Ensembl
Mir-978-v1 X: 18333231-18333293 [+] UCSC Ensembl
Mir-978-v2 X: 18333232-18333292 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGAGGACGAAGUAGAUUGGCGGCACAAUCUGCAAUCUACGCCACUGGCUUACGUUGUGGUCGAGAAUCGUGUCCAGUGCCGUAUAUUGCAGUUGUGUGGACGCAAACGGCAGCAGCGAAGG
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Structure
        10        20           30        40        50        60
UGAGGACGAAGUAGAUUG   ---|     U       C    C      CU    UUGUGG 
                  GCG   GCACAA CUGCAAU UACG CACUGG  UACG      U
                  CGC   UGUGUU GACGUUA AUGC GUGACC  GUGC      C
GGAAGCGACGACGGCAAA   AGG^     -       U    C      U-    UAAGAG 
 .       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
He Wh
Star sequence

Dsi-Mir-978-v2_5p*
mirBase accessionMIMAT0037355
Sequence 
0- GCAAUCUACGCCACUGGCUUACGU -24
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Mature sequence

Dsi-Mir-978-v2_3p
mirBase accessionMIMAT0012424
Sequence 
38- GUGUCCAGUGCCGUAUAUUGCAG -61
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