| MirGeneDB ID | Dre-Novel-8 |
|---|
| Family name |
DRE-NOVEL-8 (all species) |
|---|
| Species |
Zebrafish (Danio rerio) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
D. rerio
|
|---|
| Node of Origin (family) |
D. rerio
|
|---|
Genome context
(danRer11) |
chr4: 6920268-6920338 [+]
UCSC
Ensembl
|
|---|
| Seed |
AAAUAAU |
|---|
Precursor
(pre-Mir +30nt flank) |
UGAUUUCUCUCAAGUUUGUUGAUUUAUUAGAAAAUAAUGGUCACCCGAGGUGUAACAGCCACUCCGCUUCGCAUCAGCACCUCGGGUGUACAUUAUCAUCUAUUAAUUACAACAACCCAUCAUCAGUUAUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UGAUUUCUCUCAAGUUU- AU-| U AA GU AACAGCCACUC
GUUG UUA UAGA AUAAUG CACCCGAGGUGU \
CAAC AAU AUCU UAUUAC GUGGGCUCCACG C
UUAUUGACUACUACCCAA AUU^ U AC AU ACUACGCUUCG
. 120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
| Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
| |
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Dre-Novel-8_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AAAAUAAUGGUCACCCGAGGUGU -23
Get sequence
|
|---|
| Star sequence |
Dre-Novel-8_3p* |
| mirBase accession | None |
|---|
| Sequence |
48- ACCUCGGGUGUACAUUAUCAUCU -71
Get sequence
|
|---|
