| MirGeneDB ID | Dre-Novel-2 |
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| Family name |
DRE-NOVEL-2 (all species) |
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| Seed |
UAUGUGU |
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| Species |
Zebrafish (Danio rerio) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
D. rerio
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| Node of Origin (family) |
D. rerio
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Genome context
(danRer11) |
chr19: 6275796-6275851 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GUCGUAAUUGAAUAUGUGUUGCCCAGCUGUUUAUGUGUGUGUGAUUGGUCGCUGAUUUUGAAGUGGCUUGUUAGACACACUGGCACAGUAGGGUUGACUUUCAGGUUUAAUCAUGA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GUCGUAAUUGAAUAUGU- -| A UUAU G U GAU
GUU GCCC GCUGU GUGUGU UGAU GGUCGCU U
CAG UGGG UGACA CACACA AUUG UCGGUGA U
AGUACUAAUUUGGACUUU U^ A CGGU G U AGU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | UG at 5p(-14) |
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Tissue expression
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| Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
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| Mature sequence |
Dre-Novel-2_5p |
| mirBase accession | None |
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| Sequence |
0- UUAUGUGUGUGUGAUUGGUCGCU -23
Get sequence
|
|---|
| Star sequence |
Dre-Novel-2_3p* |
| mirBase accession | None |
|---|
| Sequence |
33- UGGCUUGUUAGACACACUGGCAC -56
Get sequence
|
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