| MirGeneDB ID | Dre-Novel-1 |
|---|
| Family name |
DRE-NOVEL-1 (all species) |
|---|
| Species |
Zebrafish (Danio rerio) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
D. rerio
|
|---|
| Node of Origin (family) |
D. rerio
|
|---|
Genome context
(danRer11) |
chr18: 15584378-15584438 [-]
UCSC
Ensembl
|
|---|
| Seed |
AUUUUCU |
|---|
Precursor
(pre-Mir +30nt flank) |
GUUUUUAAUGCAAUUGAACUGAUUAUUGUUGUUCUGAAAGAAAACAAAGUAGAUAUUAAAUCAAAUUUCUAUUUUCUUGACUUCAGACCAGCAAUGAGCGGAAAAAGAACAACUUUGUGUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GUUUUUAAUGCAAUUGAA--| A U A AA C UAUUAA
CUG UUAUUGUUG UCUGAA G AA AAAGUAGA A
GGC AGUAACGAC AGACUU C UU UUUUAUCU U
GUGUGUUUCAACAAGAAAAA^ G C - AG C UUAAAC
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
| Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
| |
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Dre-Novel-1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GUUCUGAAAGAAAACAAAGUAGA -23
Get sequence
|
|---|
| Mature sequence |
Dre-Novel-1_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UAUUUUCUUGACUUCAGACCAG -61
Get sequence
|
|---|
