| MirGeneDB ID | Dre-Mir-2189 |
|---|
| Family name |
MIR-2189 (all species) |
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| Species |
Zebrafish (Danio rerio) |
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| MiRBase ID |
dre-mir-2189
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
D. rerio
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| Node of Origin (family) |
D. rerio
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Genome context
(danRer11) |
chrUn_KN150127v1: 17180-17237 [+]
UCSC
Ensembl
|
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| Seed |
GAUUGUU |
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Precursor
(pre-Mir +30nt flank) |
UGCACAGUUUUGAUCCCGCCCAAAUUGAACACAGCUGAUGCAACCAAUCAAAUUGGUAACUAUUUUUGAUUGUUUGUAUCAGCUGUGUUUUAGUUAGGGCUUCUUCGUCCCUCUUUCU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGCACAGUUUUGAUCCC- A -| C UUGGU
GCCC AAUU GAACACAGCUGAUGCAA CAAUCAAA A
CGGG UUGA UUUGUGUCGACUAUGUU GUUAGUUU A
UCUUUCUCCCUGCUUCUU A U^ U UUAUC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
| Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
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| Star sequence |
Dre-Mir-2189_5p* |
| mirBase accession | None |
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| Sequence |
0- ACAGCUGAUGCAACCAAUCAAA -22
Get sequence
|
|---|
| Mature sequence |
Dre-Mir-2189_3p |
| mirBase accession | MIMAT0011311 |
|---|
| Sequence |
36- UGAUUGUUUGUAUCAGCUGUGU -58
Get sequence
|
|---|
| Proposed targets |
TargetScanFish: dre-miR-2189
|
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