MirGeneDB 2.1

MirGeneDB ID

Dmo-Mir-1006

Family name MIR-1006 (all species)
Seed AAAUUCG
Species Fruit fly (Drosophila mojavensis)
MiRBase ID
Paralogues
Orthologues Dan-Mir-1006  Dme-Mir-1006  Dsi-Mir-1006  Dya-Mir-1006 
Node of Origin (locus) Drosophila
Node of Origin (family) Drosophila
Genome context
(Dmoj_caf1)
scaffold_6500: 25691052-25691115 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CGCAUCCUGUCGACGCGUGUCAACUUCCAGGUGAGUUUGAAAUUGAAAUGUGUAAAUUGUUUGGUACAAUUUAAAUUCGAUUUCUUAUUCAUAGGUGCAAUACCAGUUGAUCUUCUGCCUGUGG
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Structure
        10                20        30        40        50        60 
CGCAUCCUGUCGACGCG--------|  CA    CCAG      UU         AUGUGUAAAUUGU 
                         UGU  ACUU    GUGAGU  GAAAUUGAA             U
                         ACG  UGGA    UACUUA  CUUUAGCUU             U
GGUGUCCGUCUUCUAGUUGACCAUA^  --    ----      UU         AAAUUUAACAUGG 
  120       110       100              90        80        70
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
Em Fe Ma Ma
Star sequence

Dmo-Mir-1006_5p*

mirBase accessionNone
Sequence
0- GUGAGUUUGAAAUUGAAAUGUGUAAA -26
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Mature sequence

Dmo-Mir-1006_3p

mirBase accessionNone
Sequence
41- UAAAUUCGAUUUCUUAUUCAUAG -64
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