MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-4078

Family name MIR-4078 (all species)
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4078
Paralogues
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)		 HT000174.1: 91084-91136 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-4078)		 Mir-4078 HT000174.1: 91084-91136 [+] UCSC Ensembl
Mir-4060 HT000174.1: 91188-91245 [+] UCSC Ensembl
Seed UCACUUU
Precursor
(pre-Mir +30nt flank)		 
GCAAAGAAUUAACUCUGGCUUGGUGGAAAACCUUGUAGGAGUAAAGGGAAACGUUUACAGUUUCACUUUGCCACUGCAGGUCUUACCGCUGAAGCAAAAUCCACUGUGGUUCA
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Structure
        10         20         30        40        50      
GCAAAGAAUUAACUCUG-    -|    A  AC       GA      G     GUU 
                  GCUU GGUGG AA  CUUGUAG  GUAAAG GAAAC   \
                  CGAA UCGCC UU  GGACGUC  CGUUUC CUUUG   U
ACUUGGUGUCACCUAAAA    G^    A  CU       AC      A     ACA 
 110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
C- C- C- C- C- C- C- C- C- C- Ga La La
Star sequence

Cin-Mir-4078_5p*
mirBase accessionMIMAT0016645
Sequence 
0- CCUUGUAGGAGUAAAGGGAAAC -22
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Mature sequence

Cin-Mir-4078_3p
mirBase accessionMIMAT0016646
Sequence 
31- UUCACUUUGCCACUGCAGGUCU -53
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