MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-1502-P4

Family name MIR-1502 (all species)
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-1502c
Paralogues Cin-Mir-1502-P1  Cin-Mir-1502-P2  Cin-Mir-1502-P3 
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)		 3: 570975-571033 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1502-P4)		 Mir-1502-P1 3: 568849-568908 [+] UCSC Ensembl
Mir-4018-P1 3: 568964-569018 [+] UCSC Ensembl
Mir-1502-P2 3: 569083-569140 [+] UCSC Ensembl
Mir-1502-P3 3: 569197-569256 [+] UCSC Ensembl
Mir-4018-P2 3: 569570-569648 [+] UCSC Ensembl
Mir-1502-P4 3: 570975-571033 [+] UCSC Ensembl
Seed GAACUUU
Precursor
(pre-Mir +30nt flank)		 
ACACACAACACAGCCAAGCUAAUAAAGUGAUGAACUUUACCAUGAAAAAGCCUGUUAAUUGAAAUGCAGGGUUUUUCAUGGAGUUCGCCAAAGAAAAUAGCUCUUUCAUCGUGAACUAA
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Structure
        10         20         30        40        50        60
ACACACAACACAGCCAA-    AUAAAG-| A      UUA          G     UAAU 
                  GCUA       UG UGAACU   CCAUGAAAAA CCUGU    U
                  CGAU       AC GCUUGA   GGUACUUUUU GGACG    G
AAUCAAGUGCUACUUUCU    AAAAGAA^ C      ---          G     UAAA 
       110       100        90           80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
C- C- C- C- C- C- C- C- C- C- Ga La La
Mature sequence

Cin-Mir-1502-P4_5p
mirBase accessionMIMAT0016491
Sequence 
0- UGAACUUUACCAUGAAAAAGCCUGU -25
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Star sequence

Cin-Mir-1502-P4_3p*
mirBase accessionMIMAT0016492
Sequence 
37- AGGGUUUUUCAUGGAGUUCGCC -59
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