MirGeneDB 3.0
MirGeneDB ID

Cel-Mir-5594

Family name MIR-5594 (all species)
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-5594
Paralogues
Orthologues
Node of Origin (locus) C. elegans
Node of Origin (family) C. elegans
Genome context
(ce11)		 chrII: 11865130-11865187 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-5594)		 Mir-355 chrII: 11833564-11833623 [-] UCSC Ensembl
Mir-5594 chrII: 11865130-11865187 [-] UCSC Ensembl
Mir-279-P11 chrII: 11880959-11881025 [-] UCSC Ensembl
Mir-36-P8 chrII: 11889823-11889891 [+] UCSC Ensembl
Mir-2-o4 chrII: 11889930-11889992 [+] UCSC Ensembl
Mir-279-P10 chrII: 11890038-11890103 [+] UCSC Ensembl
Seed AGAGUAC
Precursor
(pre-Mir +30nt flank)		 
UUGCCUACUGCGAAAAUGUGUGCGCCUUUGAAGAGUACUGUAGUUUCAAAAUUUCAUUGAUUAAAAUUUUGAACUACAGUACUCUUCAAAAGCUUUUUCACAUUUAACAUUUCUUGUC
Get precursor sequence
Structure
        10        20          30        40        50         
UUGCCUACUGCGAAAAUGUGUGC--| C                   U      UUCAUU 
                         GC UUUGAAGAGUACUGUAGUU CAAAAU      \
                         CG AAACUUCUCAUGACAUCAA GUUUUA      G
CUGUUCUUUACAAUUUACACUUUUU^ A                   -      AAAUUA 
      110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Da Ea Mi Wi Yo Yo
Mature sequence

Cel-Mir-5594_5p
mirBase accessionMIMAT0022309
Sequence 
0- AAGAGUACUGUAGUUUCAAAAU -22
Get sequence
Co-mature sequence

Cel-Mir-5594_3p
mirBase accessionMIMAT0022310
Sequence 
37- UUUGAACUACAGUACUCUUCA -58
Get sequence