MirGeneDB 2.1

MirGeneDB ID

Cel-Mir-2210

Family name MIR-2210 (all species)
Seed AAAGUCG
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-2210
Paralogues
Orthologues
Node of Origin (locus) C. elegans
Node of Origin (family) C. elegans
Genome context
(ce11)
chrIV: 10914618-10914678 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-2210)
Mir-2210 chrIV: 10914618-10914678 [+] UCSC Ensembl
Mir-246 chrIV: 10940152-10940215 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCUGUAUAUUGUUUAGUCCAUUCAGUUUGUAGGCAGAUCAAUCAAUUUUUAGGUUUAUAUAAAUAAUCCUAAAGUCGAUUGCUCUACCCACAAAAAGUAAUGUUGACUUGAAGUUAUGUAU
Get precursor sequence
Structure
        10         20         30        40        50        60
UCUGUAUAUUGUUUAGUC-    CAG-|    A  C   U     AAU       UUUAUA 
                   CAUU    UUUGU GG AGA CAAUC   UUUUAGG      U
                   GUAA    AAACA CC UCU GUUAG   GAAAUCC      A
UAUGUAUUGAAGUUCAGUU    UGAA^    C  A   C     CU-       UAAUAA 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Wt Da Ea Mi Yo Yo
Star sequence

Cel-Mir-2210_5p*

mirBase accessionMIMAT0011435
Sequence
0- AGGCAGAUCAAUCAAUUUUUAGG -23
Get sequence
Proposed targets microrna.org: MIMAT0011435
TargetScanWorm: cel-miR-2210
Mature sequence

Cel-Mir-2210_3p

mirBase accessionMIMAT0011436
Sequence
39- UAAAGUCGAUUGCUCUACCCAC -61
Get sequence
Proposed targets microrna.org: MIMAT0011436