MirGeneDB 2.1

MirGeneDB ID

Cbr-Mir-7580-P2

Family name MIR-7580 (all species)
Seed AACCCAA
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-7580-2
Paralogues Cbr-Mir-7580-P1 
Orthologues
Node of Origin (locus) C. briggsae
Node of Origin (family) C. briggsae
Genome context
(CB4)
X: 11135472-11135533 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-7580-P2)
Mir-230 X: 11132721-11132785 [+] Ensembl
Mir-7580-P2 X: 11135472-11135533 [-] Ensembl
Mir-7580-P1 X: 11141279-11141340 [+] Ensembl
Mir-791 X: 11146148-11146211 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUUUUACCAAAAAUUUGGAAAGUUCCUUUCAGCCACUUCGGUUGUGGUUAUACAAACAGAAGUUGAUAUAACCCAAUCACGAAAAUGGCUGAUGGUGAUGUCUGCAAAAUGCUCUUUUUUCA
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Structure
        10           20        30         40          50         
UUUUUACCAAAAAUUUG---  AAGUU  UU       C-    --|   U       CAAACA 
                    GA     CC  UCAGCCA  UUCG  GUUG GGUUAUA      G
                    CU     GG  AGUCGGU  AAGC  UAAC CCAAUAU      A
ACUUUUUUCUCGUAAAACGU  GUAGU  U-       AA    AC^   -       AGUUGA 
120       110       100         90        80         70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 Cb Ea Ma Yo
Star sequence

Cbr-Mir-7580-P2_5p*

mirBase accessionNone
Sequence
0- AGCCACUUCGGUUGUGGUUAUA -22
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Mature sequence

Cbr-Mir-7580-P2_3p

mirBase accessionMIMAT0029581
Sequence
38- UAACCCAAUCACGAAAAUGGCUGA -62
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