| MirGeneDB ID | Bta-Mir-28 |
|---|
| Family name |
MIR-28 (all species) |
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| Species |
Cow (Bos taurus) |
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| MiRBase ID |
bta-mir-28
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| Paralogues |
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| Orthologues |
Cfa-Mir-28
Cja-Mir-28
Cpo-Mir-28
Dno-Mir-28
Eca-Mir-28
Ete-Mir-28
Hsa-Mir-28
Laf-Mir-28
Mml-Mir-28
Mmr-Mir-28
Mmu-Mir-28
Ocu-Mir-28
Pab-Mir-28
Rno-Mir-28
|
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| Node of Origin (locus) |
Eutheria
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| Node of Origin (family) |
Eutheria
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Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037328.1: 78661469-78661530 [-]
UCSC
Ensembl
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| Seed |
ACUAGAU |
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Precursor
(pre-Mir +30nt flank) |
CAAGAAAGAUAAAAAAUGGUCCUUGCCCUCAAGGAGCUCACAGUCUAUUGAGUUGCCUUUCUGACUUUCCCACUAGAUUGAGAGCUCCUGGAGGGCAGGCACUUUUGUUCAACUGGAAAAAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CAAGAAAGAUAAAAAAU--| C A A U AGUUGCCUU
GGU CUUGCCCUC AGGAGCUC CAGUCUA UG U
UCA GGACGGGAG UCCUCGAG GUUAGAU AC C
AAAAAAGGUCAACUUGUUU^ C G A C CCUUUCAGU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Ad |
Bo |
Br |
Ce |
Co |
Co |
De |
Fe |
He |
Hy |
Ir |
Ki |
La |
Lo |
Mi |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
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| Star sequence |
Bta-Mir-28_5p* |
| mirBase accession | MIMAT0009272 |
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| Sequence |
0- AAGGAGCUCACAGUCUAUUGAG -22
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: bta-miR-28
|
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| Mature sequence |
Bta-Mir-28_3p |
| mirBase accession | None |
|---|
| Sequence |
40- CACUAGAUUGAGAGCUCCUGGA -62
Get sequence
|
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