| MirGeneDB ID | Bpl-Novel-3-P1a2 |
|---|
| Family name |
BPL-NOVEL-3 (all species) |
|---|
| Seed |
ACUGUUU |
|---|
| Species |
Rotifer (Brachionus plicatilis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Bpl-Novel-3-P1a1
Bpl-Novel-3-P1b1
Bpl-Novel-3-P1b2
Bpl-Novel-3-P2a
Bpl-Novel-3-P2b
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
B. plicatilis
|
|---|
| Node of Origin (family) |
B. plicatilis
|
|---|
Genome context
(Bpl_ASM1027981) |
QEOQ01000670.1: 1230425-1230489 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CAUCAUUUCAUCAUCCAUGUCACGAGAUAGAACUGUUUAUAAAUAGCCUCGCUUGUUAGAGAAGCAUUUAUGUGAGGGUAUUUCUAAGCAGUAAUUGUUCGGACAUCUAUUCAUCAACACAAGUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CAUCAUUUCAUCAUCCA---| A AUAGA U G UUGUUAGAG
UGUC CGAG ACUGUUUA AAAUA CCUCGC \
ACAG GCUU UGACGAAU UUUAU GGAGUG A
CUGAACACAACUACUUAUCU^ - GUUAA C G UAUUUACGA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Bpl-Novel-3-P1a2_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AACUGUUUAUAAAUAGCCUCGC -22
Get sequence
|
|---|
| Star sequence |
Bpl-Novel-3-P1a2_3p* |
| mirBase accession | None |
|---|
| Sequence |
43- GAGGGUAUUUCUAAGCAGUAAU -65
Get sequence
|
|---|
