MirGeneDB 2.1

MirGeneDB ID

Bpl-Novel-3-P1a1

Family name BPL-NOVEL-3 (all species)
Seed ACUGUUU
Species Rotifer (Brachionus plicatilis)
MiRBase ID
Paralogues Bpl-Novel-3-P1a2  Bpl-Novel-3-P1b1  Bpl-Novel-3-P1b2  Bpl-Novel-3-P2a  Bpl-Novel-3-P2b 
Orthologues
Node of Origin (locus) B. plicatilis
Node of Origin (family) B. plicatilis
Genome context
(Bpl_ASM1027981)
QEOQ01000670.1: 1235786-1235850 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AUCAUCAACAUUAGCAGUGUCACGAGAUAGAACUGUUUAUAAAUAGCCUCGCUUGUUAGAGAAGCAUUUAUGUGAGGGUAUUUCUAAGCAGUAAUUGUUCGGACAUCUAUUCAUCAACCCAAGUC
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Structure
        10           20        30        40        50        60  
AUCAUCAACAUUAGCAG---|   A    AUAGA        U     G      UUGUUAGAG 
                    UGUC CGAG     ACUGUUUA AAAUA CCUCGC         \
                    ACAG GCUU     UGACGAAU UUUAU GGAGUG         A
CUGAACCCAACUACUUAUCU^   -    GUUAA        C     G      UAUUUACGA 
   120       110        100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Bpl-Novel-3-P1a1_5p

mirBase accessionNone
Sequence
0- AACUGUUUAUAAAUAGCCUCGC -22
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Star sequence

Bpl-Novel-3-P1a1_3p*

mirBase accessionNone
Sequence
43- GAGGGUAUUUCUAAGCAGUAAU -65
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