MirGeneDB 2.1

MirGeneDB ID

Bpl-Novel-3-P1b2

Family name BPL-NOVEL-3 (all species)
Seed ACUGUUU
Species Rotifer (Brachionus plicatilis)
MiRBase ID
Paralogues Bpl-Novel-3-P1a1  Bpl-Novel-3-P1a2  Bpl-Novel-3-P1b1  Bpl-Novel-3-P2a  Bpl-Novel-3-P2b 
Orthologues
Node of Origin (locus) B. plicatilis
Node of Origin (family) B. plicatilis
Genome context
(Bpl_ASM1027981)
QEOQ01000670.1: 1230041-1230103 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GUGGAAUUGUGGAAAAAGGAAUCUGACUUUUACUGUUUUUUGAUAGCCUCGCGUUUCAGUCUCUCAGAUCGCGAGACUAUGUCAAACAGUUAAAGUUGGAAAAUCUGUGAACAACUAGUGUCA
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Structure
        10        20          30        40        50        60 
GUGGAAUUGUGGAAAAAGGAA--| UG     U       UUUG    C      UUUCAGU 
                       UC  ACUUU ACUGUUU    AUAG CUCGCG       C
                       AG  UGAAA UGACAAA    UAUC GAGCGC       U
ACUGUGAUCAACAAGUGUCUAAA^ GU     U       CUG-    A      UAGACUC 
 120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
To
Mature sequence

Bpl-Novel-3-P1b2_5p

mirBase accessionNone
Sequence
0- UACUGUUUUUUGAUAGCCUCGCG -23
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Star sequence

Bpl-Novel-3-P1b2_3p*

mirBase accessionNone
Sequence
41- CGAGACUAUGUCAAACAGUUAA -63
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