MirGeneDB ID | Bpl-Novel-3-P2b |
Family name |
BPL-NOVEL-3 (all species) |
Seed |
CACUGUU |
Species |
Rotifer (Brachionus plicatilis) |
MiRBase ID |
|
Paralogues |
Bpl-Novel-3-P1a1
Bpl-Novel-3-P1a2
Bpl-Novel-3-P1b1
Bpl-Novel-3-P1b2
Bpl-Novel-3-P2a
|
Orthologues |
|
Node of Origin (locus) |
B. plicatilis
|
Node of Origin (family) |
B. plicatilis
|
Genome context (Bpl_ASM1027981) |
QEOQ01000670.1: 1229925-1229988 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UAGUGUCAUCGCUAAAUAAGUAUCAGUGUUUCACUGUUUGUCAAUAGCCUCGCUAGAUGUGUUCCUAGUGCCUGGCUAUUGCAAAUAGUCGAUAUUCUGAACCUGUUUUCAUCAAAUACAAAAA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UAGUGUCAUCGCUAAAUA-- UA U U -| U UC UAGAUGU
AG UCAG GU UC ACUGUUUG CAAUAGCC GC G
UC AGUC UA AG UGAUAAAC GUUAUCGG CG U
AAAAACAUAAACUACUUUUG CA U U C^ - UC UGAUCCU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Bpl-Novel-3-P2b_5p |
mirBase accession | None |
Sequence |
0- UCACUGUUUGUCAAUAGCCUCGC -23
Get sequence
|
Star sequence |
Bpl-Novel-3-P2b_3p* (predicted) |
mirBase accession | None |
Sequence |
39- GCCUGGCUAUUGCAAAUAGUCGAUA -64
Get sequence
|