| MirGeneDB ID | Bla-Mir-4869 |
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| Family name |
MIR-4869 (all species) |
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| Seed |
CGAUGUU |
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| Species |
European lancelet (Branchiostoma lanceolatum) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Bfl-Mir-4869
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| Node of Origin (locus) |
Branchiostoma
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| Node of Origin (family) |
Branchiostoma
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Genome context
(BraLan2) |
Sc0000022: 2099011-2099075 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAUGGAUCCAUUCUACUGCACGUUUCCGUUACGAUGUUGACUUCCGCUCCUCUGUGCUCAUGUUGUAACUAGAGGGACCUGUAGUCAACACGAGAUGGAAACGCGCCAAAAACUACAAACAGAAU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
CAUGGAUCCAUUCUACU--| A A A UCCGC- GUGCUCAU
GC CGUUUCCGUU CG UGUUGACU UCCUCU \
CG GCAAAGGUAG GC ACAACUGA GGGAGA G
UAAGACAAACAUCAAAAAC^ C A - UGUCCA UCAAUGUU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Dicer cut -1 on the 3p arm. |
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Mature sequence |
Bla-Mir-4869_5p |
| mirBase accession | None |
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| Sequence |
0- ACGAUGUUGACUUCCGCUCCUCU -23
Get sequence
|
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| Star sequence |
Bla-Mir-4869_3p* |
| mirBase accession | None |
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| Sequence |
42- AGGGACCUGUAGUCAACACGAGA -65
Get sequence
|
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