MirGeneDB 2.1

MirGeneDB ID

Bla-Mir-4866

Family name MIR-4866 (all species)
Seed CACACUU
Species European lancelet (Branchiostoma lanceolatum)
MiRBase ID
Paralogues
Orthologues Bfl-Mir-4866 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Branchiostoma
Genome context
(BraLan2)
Sc0000043: 1850222-1850278 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UACAUAUCUGCAGUGCUAGACCUGUACCCAUCACACUUGUACUUCUUAGCAUGUGGCACAGGGAUGCUUAGCAGUGCAAGUGUGACAGGUAUGGUGUUUCCUUCUCUUCUCGACGGU
Get precursor sequence
Structure
        10         20         30        40        50        
UACAUAUCUGCAGUGCU-    -|      CA             U  U     GUGGC 
                  AGAC CUGUACC  UCACACUUGUACU CU AGCAU     \
                  UUUG GGUAUGG  AGUGUGAACGUGA GA UCGUA     A
UGGCAGCUCUUCUCUUCC    U^      AC             C  U     GGGAC 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Ad Ad Em Em Em Em
Mature sequence

Bla-Mir-4866_5p

mirBase accessionNone
Sequence
0- UCACACUUGUACUUCUUAGCAU -22
Get sequence
Star sequence

Bla-Mir-4866_3p*

mirBase accessionNone
Sequence
35- GCUUAGCAGUGCAAGUGUGACA -57
Get sequence