| MirGeneDB ID | Bko-Mir-87-o7 |
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| Family name |
MIR-87 (all species) |
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| Species |
Monogonont Rotifer 2 (Brachionus koreanus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Bpl-Mir-87-o7
Gsp-Mir-87
Sne-Mir-87
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| Node of Origin (locus) |
Brachionus
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| Node of Origin (family) |
Protostomia
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Genome context
(Brachionus_koreanusGCA_016987375.1_Bk_v0.5.4_genomic) |
PJRA01000263.1: 5959829-5959907 [-]
Ensembl
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| Seed |
UGAGCAA |
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Precursor
(pre-Mir +30nt flank) |
CCAUUUGUAUUGAGUAUAAAUUUAACUAUUGCACUUGAAACAUUGUUCAAACCUUAGUUAGAAUGCUAAAUAGAUAUCUAUUUACAGGUGAGCAAAGUUUCAAGUGUGUUUGUUAAAUUUAGUUCUUCAUUUAUAGUGA
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
CCAUUUGUAUUGAGUAU--| UAU A AA UUAGUUAGAAUGCUAA
AAAUUUAAC UGCACUUGAAAC UUGUUC ACC \
UUUAAAUUG GUGUGAACUUUG AACGAG UGG A
AGUGAUAUUUACUUCUUGA^ UUU A -- ACAUUUAUCUAUAGAU
130 120 110 100 90 80 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear whether this is a descendant of the original Mir-87-P1 or -P2 gene. |
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Bko-Mir-87-o7_5p* |
| mirBase accession | None |
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| Sequence |
0- GCACUUGAAACAUUGUUCAAACC -23
Get sequence
|
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| Mature sequence |
Bko-Mir-87-o7_3p |
| mirBase accession | None |
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| Sequence |
57- GUGAGCAAAGUUUCAAGUGUGU -79
Get sequence
|
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