| MirGeneDB ID | Bpl-Mir-87-o7 |
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| Family name |
MIR-87 (all species) |
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| Seed |
UGAGCAA |
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| Species |
Rotifer (Brachionus plicatilis) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
B. plicatilis
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| Node of Origin (family) |
Protostomia
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Genome context
(Bpl_ASM1027981) |
QEOQ01000573.1: 507118-507197 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UUCAGUCGAAUAAAAGUAAAUUUAACUAUUGCACUUGAAACAUUGUUCAAACCUUAGUUAGAAUGCUAAAAUAGAUAGCUAUUUUCAGGUGAGCAAAGUUUCAAGUGUGUUUGUUAAAAUUUAGAUCAUCAUCAGCAAUA
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60 70
UUCAGUCGAAUAAAAGUAAA--| UAU A AA UUAGUUAGAAUGCUAA
UUUAAC UGCACUUGAAAC UUGUUC ACC A
AAAUUG GUGUGAACUUUG AACGAG UGG A
AUAACGACUACUACUAGAUUUA^ UUU A -- ACUUUUAUCGAUAGAU
. 130 120 110 100 90 80 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear whether this is a descendant of the original Mir-87-P1 or -P2 gene. |
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Star sequence |
Bpl-Mir-87-o7_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- GCACUUGAAACAUUGUUCAAACC -23
Get sequence
|
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| Mature sequence |
Bpl-Mir-87-o7_3p |
| mirBase accession | None |
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| Sequence |
58- GUGAGCAAAGUUUCAAGUGUGU -80
Get sequence
|
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