| MirGeneDB ID | Bpl-Mir-87-o7 |
|---|
| Family name |
MIR-87 (all species) |
|---|
| Species |
Monogonont Rotifer 1 (Brachionus plicatilis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Bko-Mir-87-o7
Gsp-Mir-87
Sne-Mir-87
|
|---|
| Node of Origin (locus) |
Brachionus
|
|---|
| Node of Origin (family) |
Protostomia
|
|---|
Genome context
(Bpl_ASM1027981) |
QEOQ01000573.1: 507118-507197 [+]
Ensembl
|
|---|
| Seed |
UGAGCAA |
|---|
Precursor
(pre-Mir +30nt flank) |
UUCAGUCGAAUAAAAGUAAAUUUAACUAUUGCACUUGAAACAUUGUUCAAACCUUAGUUAGAAUGCUAAAAUAGAUAGCUAUUUUCAGGUGAGCAAAGUUUCAAGUGUGUUUGUUAAAAUUUAGAUCAUCAUCAGCAAUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60 70
UUCAGUCGAAUAAAAGUAAA--| UAU A AA UUAGUUAGAAUGCUAA
UUUAAC UGCACUUGAAAC UUGUUC ACC A
AAAUUG GUGUGAACUUUG AACGAG UGG A
AUAACGACUACUACUAGAUUUA^ UUU A -- ACUUUUAUCGAUAGAU
. 130 120 110 100 90 80 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | It is not clear whether this is a descendant of the original Mir-87-P1 or -P2 gene. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Bpl-Mir-87-o7_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- GCACUUGAAACAUUGUUCAAACC -23
Get sequence
|
|---|
| Mature sequence |
Bpl-Mir-87-o7_3p |
| mirBase accession | None |
|---|
| Sequence |
58- GUGAGCAAAGUUUCAAGUGUGU -80
Get sequence
|
|---|
