| MirGeneDB ID | Bko-Mir-12596 |
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| Family name |
MIR-12596 (all species) |
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| Species |
Monogonont Rotifer 2 (Brachionus koreanus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Ava-Mir-12596-P1
Ava-Mir-12596-P2
Bpl-Mir-12596
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| Node of Origin (locus) |
Rotifera
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| Node of Origin (family) |
Rotifera
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Genome context
(Brachionus_koreanusGCA_016987375.1_Bk_v0.5.4_genomic) |
PJRA01000018.1: 85106-85187 [+]
Ensembl
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| Seed |
AGAUGUA |
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Precursor
(pre-Mir +30nt flank) |
UCACAGAUUCUUCACUUGAAACAUAGCAUUGAGAUGUAUUGUUAACUAACCGUAGAUUUUAAGACAAUUUAGAUUCAGAUCUAAAUUUGGUUGGUUAAUUUUACGUCUACACUGUCAUUGUUUCAUAACCCAACACUCAUCA
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
UCACAGAUUCUUCACUU- UA- U -| UU UAGAUUUUAAGACAAUU
GAAACA GCA UG AGAUGUA GUUAACUAACCG \
CUUUGU UGU AC UCUGCAU UAAUUGGUUGGU U
ACUACUCACAACCCAAUA UAC C A^ UU UUAAAUCUAGACUUAGA
140 130 120 110 100 90 80 |
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| Deep sequencing |
Go to detailed chart
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| Comment | There is a second Dicer cut -1 on the 3p arm. |
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| 3' NTU |
No
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| Motifs | UG at 5p(-14) |
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Tissue expression
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| Mature sequence |
Bko-Mir-12596_5p |
| mirBase accession | None |
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| Sequence |
0- GAGAUGUAUUGUUAACUAACCG -22
Get sequence
|
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| Star sequence |
Bko-Mir-12596_3p* |
| mirBase accession | None |
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| Sequence |
59- GUUGGUUAAUUUUACGUCUACAC -82
Get sequence
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