| MirGeneDB ID | Bpl-Mir-12596 |
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| Family name |
MIR-12596 (all species) |
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| Species |
Monogonont Rotifer 1 (Brachionus plicatilis) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Ava-Mir-12596-P1
Ava-Mir-12596-P2
Bko-Mir-12596
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| Node of Origin (locus) |
Rotifera
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| Node of Origin (family) |
Rotifera
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Genome context
(Bpl_ASM1027981) |
QEOQ01000192.1: 1028040-1028121 [+]
Ensembl
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| Seed |
AGAUGUA |
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Precursor
(pre-Mir +30nt flank) |
ACUCACUAUUCAAACUUAGAACAUAGCAUUGAGAUGUAUUGUUAACUAACCGUAGAUUUAAUGAUUGUUUAGAUUCUUGUCUAAAUUUGGUUGGUUAAUUUUACGUCUACACUGUCAUUGUUUCUUCACUCAUCUGUUAAAA
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
ACUCACUAUUCAAACUUA- UA- U -| UU UAGAUUUAAUGAUUGUU
GAACA GCA UG AGAUGUA GUUAACUAACCG \
UUUGU UGU AC UCUGCAU UAAUUGGUUGGU U
AAAAUUGUCUACUCACUUC UAC C A^ UU UUAAAUCUGUUCUUAGA
140 130 120 110 100 90 80 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Dicer cut -1 on the 3p arm. |
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Mature sequence |
Bpl-Mir-12596_5p |
| mirBase accession | None |
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| Sequence |
0- GAGAUGUAUUGUUAACUAACCG -22
Get sequence
|
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| Star sequence |
Bpl-Mir-12596_3p* |
| mirBase accession | None |
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| Sequence |
59- GUUGGUUAAUUUUACGUCUACAC -82
Get sequence
|
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