MirGeneDB 2.1
MirGeneDB ID

Xtr-Let-7-P2c3

Family name LET-7 (all species)
Seed GAGGUAG
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-let-7g
Paralogues Xtr-Let-7-P1b  Xtr-Let-7-P1c  Xtr-Let-7-P2a1  Xtr-Let-7-P2a2  Xtr-Let-7-P2a3  Xtr-Let-7-P2b2  Xtr-Let-7-P2b3  Xtr-Let-7-P2c2  Xtr-Let-7-P2c4 
Orthologues Aae-Let-7  Aca-Let-7-P2c3  Ami-Let-7-P2c3  Bge-Let-7  Bpl-Let-7  Bta-Let-7-P2c3  Cfa-Let-7-P2c3  Cgi-Let-7  Cli-Let-7-P2c3  Cmi-Let-7-P2c3  Cpi-Let-7-P2c3  Cpo-Let-7-P2c3  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P2c3  Dpu-Let-7  Dre-Let-7-P2c3  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Ete-Let-7-P2c3  Gga-Let-7-P2c3  Gja-Let-7-P2c3  Gmo-Let-7-P2c3  Hme-Let-7  Hsa-Let-7-P2c3  Isc-Let-7  Lan-Let-7  Lch-Let-7-P2c3  Lgi-Let-7  Loc-Let-7-P2c3  Mal-Let-7-P2c3  Mdo-Let-7-P2c3  Mml-Let-7-P2c3  Mmu-Let-7-P2c3  Mun-Let-7-P2c3  Npo-Let-7  Oan-Let-7-P2c3  Obi-Let-7  Ocu-Let-7-P2c3  Ovu-Let-7  Pbv-Let-7-P2c3  Pfl-Let-7  Pmi-Let-7  Rno-Let-7-P2c3  Sha-Let-7-P2c3  Sko-Let-7  Spt-Let-7-P2c3  Spu-Let-7  Sto-Let-7-P2c3  Tca-Let-7  Tgu-Let-7-P2c3  Tni-Let-7-P2c3  Xbo-Let-7  Xla-Let-7-P2c3c  Xla-Let-7-P2c3d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(xenTro9_add)		 chr4: 117752091-117752168 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAAGUUCGGACAGACUGCCUGGAUUUGGGCUGAGGUAGUUGUUUGUACAGUUUAAGGGUCUGUGACACCACCCUCUGUUGGAGAUAACUGUACAGGCCACUGCCUUGCCUAGGACAGAGCAUACUCGACAAGGAAUCC
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Structure
        10           20        30        40        50        60         
UAAGUUCGGACAGACUGC---|  GA       U        U            UAAGGGUCUGUGACAC 
                     CUG  UUUGGGC GAGGUAGU GUUUGUACAGUU                \
                     GAC  GGAUCCG UUCCGUCA CGGACAUGUCAA                C
CCUAAGGAACAGCUCAUACGA^  A-       -        C            UAGAGGUUGUCUCCCA 
      130       120        110        100        90        80        70
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Em Em Em Em He
Mature sequence

Xtr-Let-7-P2c3_5p
mirBase accessionMIMAT0003646
Sequence 
0- UGAGGUAGUUGUUUGUACAGUU -22
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Proposed targets TargetScanVert: xtr-let-7g
Star sequence

Xtr-Let-7-P2c3_3p*
mirBase accessionNone
Sequence 
57- CUGUACAGGCCACUGCCUUGC -78
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