MirGeneDB 2.1

MirGeneDB ID

Ami-Let-7-P2c3

Family name LET-7 (all species)
Seed GAGGUAG
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-let-7g
Paralogues Ami-Let-7-P1b  Ami-Let-7-P1c  Ami-Let-7-P1d  Ami-Let-7-P2a1  Ami-Let-7-P2a2  Ami-Let-7-P2a3  Ami-Let-7-P2a4  Ami-Let-7-P2b1  Ami-Let-7-P2b2  Ami-Let-7-P2b3  Ami-Let-7-P2b4  Ami-Let-7-P2c1  Ami-Let-7-P2c2 
Orthologues Aae-Let-7  Aca-Let-7-P2c3  Bge-Let-7  Bpl-Let-7  Bta-Let-7-P2c3  Cfa-Let-7-P2c3  Cgi-Let-7  Cli-Let-7-P2c3  Cmi-Let-7-P2c3  Cpi-Let-7-P2c3  Cpo-Let-7-P2c3  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P2c3  Dpu-Let-7  Dre-Let-7-P2c3  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Ete-Let-7-P2c3  Gga-Let-7-P2c3  Gja-Let-7-P2c3  Gmo-Let-7-P2c3  Hme-Let-7  Hsa-Let-7-P2c3  Isc-Let-7  Lan-Let-7  Lch-Let-7-P2c3  Lgi-Let-7  Loc-Let-7-P2c3  Mal-Let-7-P2c3  Mdo-Let-7-P2c3  Mml-Let-7-P2c3  Mmu-Let-7-P2c3  Mun-Let-7-P2c3  Npo-Let-7  Oan-Let-7-P2c3  Obi-Let-7  Ocu-Let-7-P2c3  Ovu-Let-7  Pbv-Let-7-P2c3  Pfl-Let-7  Pmi-Let-7  Rno-Let-7-P2c3  Sha-Let-7-P2c3  Sko-Let-7  Spt-Let-7-P2c3  Spu-Let-7  Sto-Let-7-P2c3  Tca-Let-7  Tgu-Let-7-P2c3  Tni-Let-7-P2c3  Xbo-Let-7  Xla-Let-7-P2c3c  Xla-Let-7-P2c3d  Xtr-Let-7-P2c3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017710463.1: 483091-483169 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GAACCUGGUUCCUCUUGCCUGAUUCCAAGCUGAGGUAGUAGUUUGUACAGUUUGAGGGUCUAUGAUACCACCCGGUACAGGAGAUUAACUGUACAGGCCACUGCCUUGCCUGGGACAGAGCACUGUCAGCUGAAAGAAU
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Structure
        10           20        30        40        50        60         
GAACCUGGUUCCUCUUGC---|  A     A  U        A            UGAGGGUCUAUGAUAC 
                     CUG UUCCA GC GAGGUAGU GUUUGUACAGUU                C
                     GAC AGGGU CG UUCCGUCA CGGACAUGUCAA                A
UAAGAAAGUCGACUGUCACGA^  -     C  -        C            UUAGAGGACAUGGCCC 
       130       120        110        100        90        80        70
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
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Mature sequence

Ami-Let-7-P2c3_5p

mirBase accessionMIMAT0038014
Sequence
0- UGAGGUAGUAGUUUGUACAGUU -22
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Star sequence

Ami-Let-7-P2c3_3p*

mirBase accessionMIMAT0038015
Sequence
58- CUGUACAGGCCACUGCCUUGC -79
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