MirGeneDB 2.1

MirGeneDB ID

Xtr-Let-7-P1b

Family name LET-7 (all species)
Seed GAGGUAG
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-let-7a
Paralogues Xtr-Let-7-P1c  Xtr-Let-7-P2a1  Xtr-Let-7-P2a2  Xtr-Let-7-P2a3  Xtr-Let-7-P2b2  Xtr-Let-7-P2b3  Xtr-Let-7-P2c2  Xtr-Let-7-P2c3  Xtr-Let-7-P2c4 
Orthologues Aae-Let-7  Aca-Let-7-P1b  Ami-Let-7-P1b  Bge-Let-7  Bpl-Let-7  Bta-Let-7-P1b  Cfa-Let-7-P1b  Cgi-Let-7  Cin-Let-7-P1  Cpi-Let-7-P1b  Cpo-Let-7-P1b  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dpu-Let-7  Dre-Let-7-P1b1  Dre-Let-7-P1b2  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Ete-Let-7-P1b  Gja-Let-7-P1b  Gmo-Let-7-P1b1  Gmo-Let-7-P1b2  Hme-Let-7  Hsa-Let-7-P1b  Isc-Let-7  Lan-Let-7  Lch-Let-7-P1b  Lgi-Let-7  Loc-Let-7-P1b  Mal-Let-7-P1b1  Mal-Let-7-P1b2  Mdo-Let-7-P1b  Mml-Let-7-P1b  Mmu-Let-7-P1b  Mun-Let-7-P1b  Npo-Let-7  Oan-Let-7-P1b  Obi-Let-7  Ocu-Let-7-P1b  Ovu-Let-7  Pbv-Let-7-P1b  Pfl-Let-7  Pmi-Let-7  Rno-Let-7-P1b  Sha-Let-7-P1b  Sko-Let-7  Spt-Let-7-P1b  Spu-Let-7  Sto-Let-7-P1b  Tca-Let-7  Tni-Let-7-P1b1  Tni-Let-7-P1b2  Xbo-Let-7  Xla-Let-7-P1b3  Xla-Let-7-P1b4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(xenTro9_add)
chr7: 112714578-112714644 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Let-7-P1b)
Mir-10-P2b chr7: 112711722-112711779 [+] UCSC Ensembl
Let-7-P1b chr7: 112714578-112714644 [+] UCSC Ensembl
Mir-10-P3b chr7: 112726416-112726474 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGGCUUCUUCUGCUCGGUGGGCUCCAGGCUGAGGUAGUAGGUUGUAUAGUUGAGGAUAACACCAAAGGAGAUAACUGUACAGCCUCCUAUCUUUCCCUGGGGCUUUGCCAUAACAACAAAGCCUCU
Get precursor sequence
Structure
        10         20         30        40        50        60   
CUGGCUUCUUCUGCUCG- UG -|       CU       U             GAGGAUAACA 
                  G  G GCUCCAGG  GAGGUAG AGGUUGUAUAGUU          \
                  C  U CGGGGUCC  UUCUAUC UCCGACAUGUCAA          C
UCUCCGAAACAACAAUAC GU U^       CU       C             UAGAGGAAAC 
     120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Em Em Em Em He
Mature sequence

Xtr-Let-7-P1b_5p

mirBase accessionMIMAT0003667
Sequence
0- UGAGGUAGUAGGUUGUAUAGUU -22
Get sequence
Proposed targets TargetScanVert: xtr-let-7a
Star sequence

Xtr-Let-7-P1b_3p*

mirBase accessionNone
Sequence
45- CUGUACAGCCUCCUAUCUUUCC -67
Get sequence