MirGeneDB 2.1
MirGeneDB ID

Xla-Mir-31-P17

Family name MIR-31 (all species)
Seed GGCAAGA
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-31-P18 
Orthologues Aae-Mir-31  Aca-Mir-31  Ami-Mir-31  Asu-Mir-31  Bfl-Mir-31  Bge-Mir-31  Bla-Mir-31  Bpl-Mir-31  Bta-Mir-31  Cbr-Mir-31  Cel-Mir-31  Cfa-Mir-31  Cgi-Mir-31  Cin-Mir-31  Cli-Mir-31  Cmi-Mir-31  Cpi-Mir-31  Cpo-Mir-31  Cte-Mir-31  Dma-Mir-31  Dno-Mir-31  Dpu-Mir-31  Dre-Mir-31  Ebu-Mir-31  Efe-Mir-31  Esc-Mir-31  Ete-Mir-31  Gga-Mir-31  Gmo-Mir-31  Hme-Mir-31  Hsa-Mir-31  Isc-Mir-31  Lch-Mir-31  Lgi-Mir-31  Mal-Mir-31  Mdo-Mir-31  Mml-Mir-31  Mmu-Mir-31  Mun-Mir-31  Npo-Mir-31  Oan-Mir-31  Obi-Mir-31  Ocu-Mir-31  Ovu-Mir-31  Pbv-Mir-31  Pfl-Mir-31  Rno-Mir-31  Sha-Mir-31  Sko-Mir-31  Spt-Mir-31  Spu-Mir-31  Sto-Mir-31  Tca-Mir-31  Tgu-Mir-31  Tni-Mir-31  Xbo-Mir-31  Xtr-Mir-31 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030724.1: 118648966-118649024 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUUCUUAAAUCAACUUAGUACUUGAGAGAAGGCAAGAUGUUGGCAAAGCUGUAGCAUCAGAAACCUGCUGUGCCAUCAUAUUGCCAUCUUUCUUGUCUACCAGCACCAGAGAAUUUAU
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Structure
        10           20        30        40        50         
GCUUCUUAAAUCAACUU---| U  UU      A     G   U     A   UGUAGCAU 
                    AG AC  GAGAGA GGCAA AUG UGGCA AGC        \
                    UC UG  CUUUCU CCGUU UAC ACCGU UCG        C
UAUUUAAGAGACCACGACCA^ -  UU      A     A   U     G   UCCAAAGA 
       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Eg He Re St St St St
Mature sequence

Xla-Mir-31-P17_5p
mirBase accessionNone
Sequence 
0- AGGCAAGAUGUUGGCAAAGCUGU -23
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Star sequence

Xla-Mir-31-P17_3p*
mirBase accessionNone
Sequence 
36- UGCUGUGCCAUCAUAUUGCCAUC -59
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