MirGeneDB

MirGeneDB ID

Mmu-Mir-31

Family name MIR-31 (all species)
Seed GGCAAGA
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-31
Paralogues
Orthologues Aae-Mir-31  Aca-Mir-31  Ami-Mir-31  Asu-Mir-31  Bfl-Mir-31  Bge-Mir-31  Bta-Mir-31  Cel-Mir-31  Cfa-Mir-31  Cgi-Mir-31  Cin-Mir-31  Cli-Mir-31  Cpi-Mir-31  Cpo-Mir-31  Cte-Mir-31  Dan-Mir-31-P1  Dan-Mir-31-P2  Dme-Mir-31-P1  Dme-Mir-31-P2  Dmo-Mir-31-P1  Dmo-Mir-31-P2  Dno-Mir-31  Dpu-Mir-31  Dre-Mir-31  Efe-Mir-31  Ete-Mir-31  Gga-Mir-31  Hme-Mir-31  Hsa-Mir-31  Lan-Mir-31-P6  Lan-Mir-31-P7  Lgi-Mir-31  Mdo-Mir-31  Mml-Mir-31  Oan-Mir-31  Ocu-Mir-31  Pfl-Mir-31  Pmi-Mir-31-P3  Pmi-Mir-31-P4  Pmi-Mir-31-P5a  Pmi-Mir-31-P5b  Rno-Mir-31  Sha-Mir-31  Sko-Mir-31  Spu-Mir-31  Sto-Mir-31  Tca-Mir-31  Tgu-Mir-31  Xtr-Mir-31 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(mm10)
chr4: 88910577-88910635 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAUUGCUCCUGUAACUCGGAACUGGAGAGGAGGCAAGAUGCUGGCAUAGCUGUUGAACUGAGAACCUGCUAUGCCAACAUAUUGCCAUCUUUCCUGUCUGACAGCAGCUUGGCUACCUC
Get precursor sequence
Structure
        10           20        30        40        50         
UAUUGCUCCUGUAACUC---|  ACU      GA     G   C         UGUUGAAC 
                    GGA   GGAGAG  GGCAA AUG UGGCAUAGC        \
                    UCU   CCUUUC  CCGUU UAC ACCGUAUCG        U
CUCCAUCGGUUCGACGACAG^  GU-      UA     A   A         UCCAAGAG 
       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br Ce Ce Es He Ki Li Lu Ov Pa Sk Sp Te Em
Mature sequence

Mmu-Mir-31_5p

MirBase accessionMIMAT0000538
Sequence
0- AGGCAAGAUGCUGGCAUAGCUGU -23
Get sequence
Validated targets microrna.org: MIMAT0000538
TargetScanVert: mmu-miR-31-5p
miRDB: MIMAT0000538
Star sequence

Mmu-Mir-31_3p*

MirBase accessionMIMAT0004634
Sequence
36- UGCUAUGCCAACAUAUUGCCAUC -59
Get sequence
Validated targets microrna.org: MIMAT0004634
TargetScanVert: mmu-miR-31-3p
miRDB: MIMAT0004634