Mir-34-P1

MirGeneDB ID

Pma-Mir-34-P1

Family name

MIR-34 (all species)

Seed

GGCAGUG

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

Paralogues

Pma-Mir-34-P3

Orthologues

Aae-Mir-34 Aca-Mir-34-P1 Ami-Mir-34-P1 Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P1 Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P1 Cgi-Mir-34 Cin-Mir-34 Cli-Mir-34-P1 Cmi-Mir-34-P1 Cpi-Mir-34-P1 Cpo-Mir-34-P1 Cte-Mir-34 Dan-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P1 Dpu-Mir-34 Dre-Mir-34-P1 Dsi-Mir-34 Dya-Mir-34 Ebu-Mir-34-P1 Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P1 Gga-Mir-34-P1 Gja-Mir-34-P1 Gmo-Mir-34-P1 Hsa-Mir-34-P1 Isc-Mir-34 Lch-Mir-34-P1 Lgi-Mir-34 Loc-Mir-34-P1 Mal-Mir-34-P1 Mdo-Mir-34-P1 Mml-Mir-34-P1 Mmu-Mir-34-P1 Mun-Mir-34-P1 Npo-Mir-34 Oan-Mir-34-P1 Obi-Mir-34 Ocu-Mir-34-P1 Ovu-Mir-34 Pbv-Mir-34-P1 Pfl-Mir-34 Pmi-Mir-34 Rno-Mir-34-P1 Sha-Mir-34-P1 Sko-Mir-34 Spt-Mir-34-P1 Spu-Mir-34 Sto-Mir-34-P1 Tca-Mir-34 Tgu-Mir-34-P1 Tni-Mir-34-P1 Xbo-Mir-34 Xla-Mir-34-P1a Xla-Mir-34-P1b Xtr-Mir-34-P1

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046107.1: 11782397-11782476 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGUGACAGCCUGCGCCUGUGCGUGGCCCCUUGGCAGUGUCUUAGCUGGUUGUUGUUGUUGCUGUUGCUGACGACGCUGACGUCGCCAACAAUCAGUUGGCUACUGCCCUCGGGACGCGGCACCCACACGGCUACAGGCGA

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Structure

        10         20         30        40        50        60          
GGUGACAGCCUGCGCCU-   -|   G   CUU       U  U           GUUGUUGCUGUUGCUG 
                  GUG CGUG CCC   GGCAGUG CU AGCUGGUUGUU                \
                  CAC GCGC GGG   CCGUCAU GG UUGACUAACAA                A
AGCGGACAUCGGCACACC   G^   A   CUC       C  -           CCGCUGCAGUCGCAGC 
.       130       120       110       100         90        80

Deep sequencing

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3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Mature sequence

Pma-Mir-34-P1_5p

mirBase accession

None

Sequence

0- UGGCAGUGUCUUAGCUGGUUGUU -23

Get sequence

Star sequence

Pma-Mir-34-P1_3p* (predicted)

mirBase accession

None

Sequence

58- CAAUCAGUUGGCUACUGCCCUC -80

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