Mir-34-P3d

MirGeneDB ID

Loc-Mir-34-P3d

Family name

MIR-34 (all species)

Seed

GGCAGUG

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-34-P1 Loc-Mir-34-P2a Loc-Mir-34-P2b Loc-Mir-34-P3a Loc-Mir-34-P3b Loc-Mir-34-P3c

Orthologues

Aae-Mir-34 Aca-Mir-34-P3d Ami-Mir-34-P3d Asu-Mir-34 Bge-Mir-34 Cbr-Mir-34 Cel-Mir-34 Cgi-Mir-34 Cin-Mir-34 Cli-Mir-34-P3d Cmi-Mir-34-P3d Cpi-Mir-34-P3d Cte-Mir-34 Dan-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Efe-Mir-34 Esc-Mir-34 Gga-Mir-34-P3d Gja-Mir-34-P3d Gmo-Mir-34-P3d Isc-Mir-34 Lch-Mir-34-P3d Lgi-Mir-34 Mal-Mir-34-P3d Mdo-Mir-34-P3d Mun-Mir-34-P3d Npo-Mir-34 Obi-Mir-34 Ovu-Mir-34 Pbv-Mir-34-P3d Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Sha-Mir-34-P3d Sko-Mir-34 Spt-Mir-34-P3d Spu-Mir-34 Sto-Mir-34-P3d Tca-Mir-34 Tgu-Mir-34-P3d Xbo-Mir-34 Xla-Mir-34-P3d1 Xla-Mir-34-P3d2 Xtr-Mir-34-P3d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(LepOcu1)

LG2: 5773026-5773084 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

UAAAGACAGCAACAAACGUGUGUGAUGAUUAGGCAGUGUAUCAAUAGCUGGCUGUGAACUACAAAACAGCAGCUAUGUGCACUUCCACAUCAGUACAUGCCAUGCACGUUUUAUAAAAA

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Structure

        10          20        30        40        50        60
UAAAGACAGCAACAAAC--|      A    UA  C       CA       G  GUGAAC 
                   GUGUGUG UGAU  GG AGUGUAU  AUAGCUG CU      U
                   CGUACAU ACUA  CC UCACGUG  UAUCGAC GA      A
AAAAAUAUUUUGCACGUAC^      G    CA  U       --       -  CAAAAC 
       110       100        90        80          70

Deep sequencing

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Comment

There is a second Dicer cut +2 on the 5p arm and +1 on the 3p arm.

3' NTU

Motifs

UGUG in loop

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Mature sequence

Loc-Mir-34-P3d_5p

mirBase accession

None

Sequence

0- AGGCAGUGUAUCAAUAGCUGGCU -23

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Star sequence

Loc-Mir-34-P3d_3p*

mirBase accession

None

Sequence

38- GCAGCUAUGUGCACUUCCACA -59

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