MirGeneDB ID | Sha-Mir-34-P3d |
Family name |
MIR-34 (all species) |
Seed |
GGCAGUG |
Species |
Tasmanian devil (Sarcophilus harrisii) |
MiRBase ID |
|
Paralogues |
Sha-Mir-34-P1
Sha-Mir-34-P2a
Sha-Mir-34-P2b
Sha-Mir-34-P3b
Sha-Mir-34-P3c
|
Orthologues |
Aae-Mir-34
Aca-Mir-34-P3d
Ami-Mir-34-P3d
Asu-Mir-34
Bge-Mir-34
Cbr-Mir-34
Cel-Mir-34
Cgi-Mir-34
Cin-Mir-34
Cli-Mir-34-P3d
Cmi-Mir-34-P3d
Cpi-Mir-34-P3d
Cte-Mir-34
Dan-Mir-34
Dma-Mir-34
Dme-Mir-34
Dmo-Mir-34
Dpu-Mir-34
Dsi-Mir-34
Dya-Mir-34
Efe-Mir-34
Esc-Mir-34
Gga-Mir-34-P3d
Gja-Mir-34-P3d
Gmo-Mir-34-P3d
Isc-Mir-34
Lch-Mir-34-P3d
Lgi-Mir-34
Loc-Mir-34-P3d
Mal-Mir-34-P3d
Mdo-Mir-34-P3d
Mun-Mir-34-P3d
Npo-Mir-34
Obi-Mir-34
Ovu-Mir-34
Pbv-Mir-34-P3d
Pfl-Mir-34
Pma-Mir-34-P3
Pmi-Mir-34
Sko-Mir-34
Spt-Mir-34-P3d
Spu-Mir-34
Sto-Mir-34-P3d
Tca-Mir-34
Tgu-Mir-34-P3d
Xbo-Mir-34
Xla-Mir-34-P3d1
Xla-Mir-34-P3d2
Xtr-Mir-34-P3d
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (DEVIL_add) |
GL841771.1: 109094-109154 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GUCUGGCUUUAGUAUAUGUGUGUGGUGAUUGGGCAGUGUAUUGUUAGUUAGCUGUUUUUCUUAUUUUCCAGCAACUGCAUACACUUCCACAUUUCCACAUGUUCUGUCAUCAGGACAGAUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GUCUGGCUUUAGUAUAU-- UG U -| C U U A GUUUUUC
G UGUGG GAU UGGG AGUGUAU GU AGUU GCU U
U ACACC UUA ACCU UCACAUA CG UCAA CGA U
UUAGACAGGACUACUGUCU GU U C^ - - - - CCUUUUA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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Mature sequence |
Sha-Mir-34-P3d_5p |
mirBase accession | None |
Sequence |
0- GGGCAGUGUAUUGUUAGUUAGCU -23
Get sequence
|
Star sequence |
Sha-Mir-34-P3d_3p* |
mirBase accession | None |
Sequence |
40- GCAACUGCAUACACUUCCACA -61
Get sequence
|