MirGeneDB 2.1
MirGeneDB ID

Loc-Mir-15-P2b

Family name MIR-15 (all species)
Seed AGCAGCA
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-15-P1a  Loc-Mir-15-P1b  Loc-Mir-15-P1c  Loc-Mir-15-P1c-as  Loc-Mir-15-P1d  Loc-Mir-15-P2a  Loc-Mir-15-P2c  Loc-Mir-15-P2d 
Orthologues Aca-Mir-15-P2b  Ami-Mir-15-P2b  Bta-Mir-15-P2b  Cfa-Mir-15-P2b  Cin-Mir-15-P2  Cli-Mir-15-P2b  Cmi-Mir-15-P2b  Cpi-Mir-15-P2b  Cpo-Mir-15-P2b  Dno-Mir-15-P2b  Dre-Mir-15-P2b  Ete-Mir-15-P2b  Gga-Mir-15-P2b  Gja-Mir-15-P2b  Gmo-Mir-15-P2b  Hsa-Mir-15-P2b  Lch-Mir-15-P2b  Mal-Mir-15-P2b  Mdo-Mir-15-P2b  Mml-Mir-15-P2b  Mmu-Mir-15-P2b  Mun-Mir-15-P2b  Oan-Mir-15-P2b  Ocu-Mir-15-P2b  Pbv-Mir-15-P2b  Rno-Mir-15-P2b  Sha-Mir-15-P2b  Spt-Mir-15-P2b  Sto-Mir-15-P2b  Tgu-Mir-15-P2b  Tni-Mir-15-P2b  Xla-Mir-15-P2b1  Xla-Mir-15-P2b2  Xtr-Mir-15-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(LepOcu1)		 LG14: 5761675-5761741 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UAGUUAAAAAUUAAUAUACCUUCUCCGCUUUAGCAGCACGUAAUUAUUGGUGUGUGAGAAAUAAGACCCAAACCCCAAUAUUACUUGUGCUGCUUCAGUGUGGCAGGAUUAAGCUUCUUUUGUGAUA
Get precursor sequence
Structure
        10          20        30          40        50        60  
UAGUUAAAAAUUAAUAUA--   U UC    UU        --|    U     U  GUGAGAAA 
                    CCU C  CGCU  AGCAGCAC  GUAAU AUUGG GU        U
                    GGA G  GUGA  UCGUCGUG  CAUUA UAACC CA        A
AUAGUGUUUUCUUCGAAUUA   C GU    CU        UU^    -     C  AACCCAGA 
     120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-15-P2b_5p
mirBase accessionNone
Sequence 
0- UAGCAGCACGUAAUUAUUGGUGU -23
Get sequence
Star sequence

Loc-Mir-15-P2b_3p*
mirBase accessionNone
Sequence 
43- CCCAAUAUUACUUGUGCUGCUUCA -67
Get sequence