Mir-15-P2b

MirGeneDB ID

Dre-Mir-15-P2b

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-16a

Paralogues

Dre-Mir-15-P1a1 Dre-Mir-15-P1a2 Dre-Mir-15-P1b Dre-Mir-15-P1d Dre-Mir-15-P2a1 Dre-Mir-15-P2a2 Dre-Mir-15-P2c-v1 Dre-Mir-15-P2c-v2 Dre-Mir-15-P2d

Orthologues

Aca-Mir-15-P2b Ami-Mir-15-P2b Bta-Mir-15-P2b Cfa-Mir-15-P2b Cin-Mir-15-P2 Cli-Mir-15-P2b Cmi-Mir-15-P2b Cpi-Mir-15-P2b Cpo-Mir-15-P2b Dno-Mir-15-P2b Ete-Mir-15-P2b Gga-Mir-15-P2b Gja-Mir-15-P2b Gmo-Mir-15-P2b Hsa-Mir-15-P2b Lch-Mir-15-P2b Loc-Mir-15-P2b Mal-Mir-15-P2b Mdo-Mir-15-P2b Mml-Mir-15-P2b Mmu-Mir-15-P2b Mun-Mir-15-P2b Oan-Mir-15-P2b Ocu-Mir-15-P2b Pbv-Mir-15-P2b Rno-Mir-15-P2b Sha-Mir-15-P2b Spt-Mir-15-P2b Sto-Mir-15-P2b Tgu-Mir-15-P2b Tni-Mir-15-P2b Xla-Mir-15-P2b1 Xla-Mir-15-P2b2 Xtr-Mir-15-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(danRer11)

chr15: 1543869-1543933 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P2b)

Mir-15-P1b chr15: 1543699-1543757 [+] UCSC Ensembl
Mir-15-P2b chr15: 1543869-1543933 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAACAUCUGUUCAUUCUACCUUCCUCGCUUUAGCAGCACGUAAAUAUUGGUGUGUUAUAGUCAAGGCCAACCCCAAUAUUAUGUGUGCUGCUUCAGUAAGGCAGGAGCGAGCCUCCUUUCACUUC

Get precursor sequence

Structure

        10          20        30        40         50        60 
CAACAUCUGUUCAUUCUA--   U   CG  UU           -|       U  GUUAUAG 
                    CCU CCU  CU  AGCAGCACGUA AAUAUUGG GU       U
                    GGA GGA  GA  UCGUCGUGUGU UUAUAACC CA       C
CUUCACUUUCCUCCGAGCGA   C   AU  CU           A^       C  ACCGGAA 
   120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-15-P2b_5p

mirBase accession

MIMAT0001774

Sequence

0- UAGCAGCACGUAAAUAUUGGUGU -23

Get sequence

Proposed targets

TargetScanFish: dre-miR-16a

Star sequence

Dre-Mir-15-P2b_3p*

mirBase accession

None

Sequence

41- CCCAAUAUUAUGUGUGCUGCUUCA -65

Get sequence