MirGeneDB 2.1

MirGeneDB ID

Gga-Mir-15-P2b

Family name MIR-15 (all species)
Seed AGCAGCA
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-16-2
Paralogues Gga-Mir-15-P1a  Gga-Mir-15-P1b  Gga-Mir-15-P1c  Gga-Mir-15-P2a  Gga-Mir-15-P2c 
Orthologues Aca-Mir-15-P2b  Ami-Mir-15-P2b  Bta-Mir-15-P2b  Cfa-Mir-15-P2b  Cin-Mir-15-P2  Cli-Mir-15-P2b  Cmi-Mir-15-P2b  Cpi-Mir-15-P2b  Cpo-Mir-15-P2b  Dno-Mir-15-P2b  Dre-Mir-15-P2b  Ete-Mir-15-P2b  Gja-Mir-15-P2b  Gmo-Mir-15-P2b  Hsa-Mir-15-P2b  Lch-Mir-15-P2b  Loc-Mir-15-P2b  Mal-Mir-15-P2b  Mdo-Mir-15-P2b  Mml-Mir-15-P2b  Mmu-Mir-15-P2b  Mun-Mir-15-P2b  Oan-Mir-15-P2b  Ocu-Mir-15-P2b  Pbv-Mir-15-P2b  Rno-Mir-15-P2b  Sha-Mir-15-P2b  Spt-Mir-15-P2b  Sto-Mir-15-P2b  Tgu-Mir-15-P2b  Tni-Mir-15-P2b  Xla-Mir-15-P2b1  Xla-Mir-15-P2b2  Xtr-Mir-15-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(Gallus_gallus.GRCg6a)
9: 22340725-22340789 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P2b)
Mir-15-P2b 9: 22340725-22340789 [-] UCSC Ensembl
Mir-15-P1b 9: 22340900-22340959 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAUAGAAGAGUUGCCCUACUUGUUCCGCCCUAGCAGCACGUAAAUAUUGGUGUAGUAAAAUAAACCUUAAACCCCAAUAUUAUUGUGCUGCUUAAGCGUGGCAGAGAUUCAGCAACUUGUUUAUA
Get precursor sequence
Structure
        10          20        30        40        50        60  
AAUAGAAGAGUUGCCCUAC--|   UC   CCU         UA        U  AGUAAAAU 
                     UUGU  CGC   AGCAGCACG  AAUAUUGG GU        \
                     GACG  GCG   UCGUCGUGU  UUAUAACC CA        A
AUAUUUGUUCAACGACUUAGA^   GU   AAU         UA        C  AAUUCCAA 
   120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ad Ad Br Br Ce Ce Ce Ce Ch He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Mature sequence

Gga-Mir-15-P2b_5p

mirBase accessionMIMAT0001116
Sequence
0- UAGCAGCACGUAAAUAUUGGUGU -23
Get sequence
Proposed targets TargetScanVert: gga-miR-16-5p
miRDB: MIMAT0001116
Star sequence

Gga-Mir-15-P2b_3p*

mirBase accessionMIMAT0031058
Sequence
42- CCCAAUAUUAUUGUGCUGCUUAA -65
Get sequence
Proposed targets TargetScanVert: gga-miR-16-2-3p
miRDB: MIMAT0031058