Mir-15-P2

MirGeneDB ID

Cin-Mir-15-P2

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Sea Squirt (Ciona intestinalis)

MiRBase ID

cin-mir-4059

Paralogues

Cin-Mir-15-P1

Orthologues

Aca-Mir-15-P2b Aca-Mir-15-P2c Aca-Mir-15-P2d Ami-Mir-15-P2a Ami-Mir-15-P2b Ami-Mir-15-P2c Ami-Mir-15-P2d Bta-Mir-15-P2a Bta-Mir-15-P2b Bta-Mir-15-P2c Bta-Mir-15-P2d Cfa-Mir-15-P2a Cfa-Mir-15-P2b Cfa-Mir-15-P2c Cfa-Mir-15-P2d Cli-Mir-15-P2a Cli-Mir-15-P2b Cli-Mir-15-P2c Cmi-Mir-15-P2a Cmi-Mir-15-P2b Cmi-Mir-15-P2c Cpi-Mir-15-P2a Cpi-Mir-15-P2b Cpi-Mir-15-P2c Cpo-Mir-15-P2a Cpo-Mir-15-P2b Cpo-Mir-15-P2c Cpo-Mir-15-P2d Dno-Mir-15-P2a Dno-Mir-15-P2b Dno-Mir-15-P2c Dno-Mir-15-P2d Dre-Mir-15-P2a1 Dre-Mir-15-P2a2 Dre-Mir-15-P2b Dre-Mir-15-P2c-v1 Dre-Mir-15-P2c-v2 Dre-Mir-15-P2d Ebu-Mir-15-P2f Ete-Mir-15-P2a Ete-Mir-15-P2b Ete-Mir-15-P2c Ete-Mir-15-P2d Gga-Mir-15-P2a Gga-Mir-15-P2b Gga-Mir-15-P2c Gja-Mir-15-P2a Gja-Mir-15-P2b Gja-Mir-15-P2c Gja-Mir-15-P2d Gmo-Mir-15-P2a2 Gmo-Mir-15-P2b Hsa-Mir-15-P2a Hsa-Mir-15-P2b Hsa-Mir-15-P2c Hsa-Mir-15-P2d Lch-Mir-15-P2a Lch-Mir-15-P2b Lch-Mir-15-P2c Loc-Mir-15-P2a Loc-Mir-15-P2b Loc-Mir-15-P2c Loc-Mir-15-P2d Mal-Mir-15-P2a2 Mal-Mir-15-P2b Mal-Mir-15-P2d Mdo-Mir-15-P2a Mdo-Mir-15-P2b Mdo-Mir-15-P2c-v1 Mdo-Mir-15-P2c-v2 Mdo-Mir-15-P2d Mml-Mir-15-P2a Mml-Mir-15-P2b Mml-Mir-15-P2c Mml-Mir-15-P2d Mmu-Mir-15-P2a Mmu-Mir-15-P2b Mmu-Mir-15-P2c Mmu-Mir-15-P2d Mun-Mir-15-P2a Mun-Mir-15-P2b Mun-Mir-15-P2c Oan-Mir-15-P2a Oan-Mir-15-P2b Oan-Mir-15-P2c Oan-Mir-15-P2d Ocu-Mir-15-P2a Ocu-Mir-15-P2b Ocu-Mir-15-P2c Ocu-Mir-15-P2d Pbv-Mir-15-P2a Pbv-Mir-15-P2b Pbv-Mir-15-P2c Pma-Mir-15-P2o1 Pma-Mir-15-P2o4 Rno-Mir-15-P2a Rno-Mir-15-P2b Rno-Mir-15-P2c3 Rno-Mir-15-P2c4 Rno-Mir-15-P2d Sha-Mir-15-P2a Sha-Mir-15-P2b Sha-Mir-15-P2c-v1 Sha-Mir-15-P2c-v2 Sha-Mir-15-P2d Spt-Mir-15-P2a Spt-Mir-15-P2b Spt-Mir-15-P2c Sto-Mir-15-P2a Sto-Mir-15-P2b Sto-Mir-15-P2d Tgu-Mir-15-P2a Tgu-Mir-15-P2b Tgu-Mir-15-P2c Tni-Mir-15-P2a2 Tni-Mir-15-P2b Xla-Mir-15-P2a3 Xla-Mir-15-P2a4 Xla-Mir-15-P2b1 Xla-Mir-15-P2b2 Xla-Mir-15-P2c1 Xla-Mir-15-P2c2 Xtr-Mir-15-P2a Xtr-Mir-15-P2b Xtr-Mir-15-P2c

Node of Origin (locus)

Olfactores

Node of Origin (family)

Olfactores

Genome context
(ci3)

7: 3345089-3345142 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P2)

Mir-15-P2 7: 3345089-3345142 [-] UCSC Ensembl
Mir-15-P1 7: 3345446-3345500 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAUAUUUAAAUACUACUUGCGAUGCGGGUUUAGCAGCAAAGACAGUAUUGGAAUAUUUGCUUCAAUGCUGCACUUGCUGCUCUACCUGUAUGGUAACUUACACCCUUUUCUAUA

Get precursor sequence

Structure

        10          20        30        40        50      
CAUAUUUAAAUACUACU--|  G        UU        AGA          AUA 
                   UGC AUGCGGGU  AGCAGCAA   CAGUAUUGGA   U
                   AUG UAUGUCCA  UCGUCGUU   GUCGUAACUU   U
AUAUCUUUUCCCACAUUCA^  G        UC        CAC          CGU 
  110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Cr	Cr	Cr	Cr	Cr	Cr	Cr	Cr	Cr	Cr	Ga	La	La

Mature sequence

Cin-Mir-15-P2_5p

mirBase accession

MIMAT0016606

Sequence

0- UAGCAGCAAAGACAGUAUUGGA -22

Get sequence

Star sequence

Cin-Mir-15-P2_3p*

mirBase accession

MIMAT0016607

Sequence

32- CAAUGCUGCACUUGCUGCUCUA -54

Get sequence