MirGeneDB 2.1
MirGeneDB ID

Cel-Mir-36-P8

Family name MIR-36 (all species)
Seed CACCGGG
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-42
Paralogues Cel-Mir-36-P1  Cel-Mir-36-P2  Cel-Mir-36-P3  Cel-Mir-36-P4  Cel-Mir-36-P5  Cel-Mir-36-P6  Cel-Mir-36-P7 
Orthologues Bge-Mir-36  Cbr-Mir-36-o8a  Cbr-Mir-36-o8b  Cbr-Mir-36-o8c  Cgi-Mir-36  Cte-Mir-36  Dma-Mir-36  Dpu-Mir-36  Isc-Mir-36  Npo-Mir-36  Tca-Mir-36 
Node of Origin (locus) C. elegans
Node of Origin (family) Protostomia
Genome context
(ce11)		 chrII: 11889823-11889891 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-36-P8)		 Mir-5594 chrII: 11865130-11865187 [-] UCSC Ensembl
Mir-279-o8 chrII: 11880959-11881025 [-] UCSC Ensembl
Mir-36-P8 chrII: 11889823-11889891 [+] UCSC Ensembl
Mir-2-o4 chrII: 11889930-11889992 [+] UCSC Ensembl
Mir-279-o7 chrII: 11890038-11890103 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAAAAUCCCCAUAAACCCUUCGCGGACCUUUGUGGGUGUUUGCUUUUUCGGUGAAGUUGUCUUCCGUAGCUUCUUCUUCACCGGGUUAACAUCUACAGAGGUCCAAAAAGGGGUAACUAUUGGCACUAG
Get precursor sequence
Structure
        10        20          30        40        50        60      
UAAAAUCCCCAUAAACCCUUCGC--|                U   UUUU        UUGUCUUCC 
                         GGACCUUUGUGGGUGUU GCU    CGGUGAAG         \
                         CCUGGAGACAUCUACAA UGG    GCCACUUC         G
GAUCACGGUUAUCAAUGGGGAAAAA^                U   ----        UUCUUCGAU 
       120       110       100        90            80        70
Deep sequencing
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CommentThere is a second Drosha cut -1 on both arms.
3' NTU No
MotifsNo
Tissue expression
-   +
Wt Da Ea Mi Yo Yo
Star sequence

Cel-Mir-36-P8_5p*
mirBase accessionMIMAT0015095
Sequence 
0- UGUGGGUGUUUGCUUUUUCGGUGAAG -26
Get sequence
Proposed targets microrna.org: MIMAT0015095
Mature sequence

Cel-Mir-36-P8_3p
mirBase accessionMIMAT0000013
Sequence 
47- UCACCGGGUUAACAUCUACAGA -69
Get sequence
Proposed targets microrna.org: MIMAT0000013
TargetScanWorm: cel-miR-42