MirGeneDB 2.1

MirGeneDB ID

Cel-Mir-36-P7

Family name MIR-36 (all species)
Seed CACCGGG
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-41
Paralogues Cel-Mir-36-P1  Cel-Mir-36-P2  Cel-Mir-36-P3  Cel-Mir-36-P4  Cel-Mir-36-P5  Cel-Mir-36-P6  Cel-Mir-36-P8 
Orthologues Bge-Mir-36  Cbr-Mir-36-o7a  Cbr-Mir-36-o7b  Cbr-Mir-36-o7c  Cgi-Mir-36  Cte-Mir-36  Dma-Mir-36  Dpu-Mir-36  Isc-Mir-36  Npo-Mir-36  Tca-Mir-36 
Node of Origin (locus) C. elegans
Node of Origin (family) Protostomia
Genome context
(ce11)
chrII: 11538324-11538389 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-36-P7)
Mir-36-P1 chrII: 11537629-11537689 [+] UCSC Ensembl
Mir-36-P2 chrII: 11537732-11537794 [+] UCSC Ensembl
Mir-36-P3 chrII: 11537854-11537914 [+] UCSC Ensembl
Mir-36-P4 chrII: 11537949-11538011 [+] UCSC Ensembl
Mir-36-P5 chrII: 11538103-11538164 [+] UCSC Ensembl
Mir-36-P6 chrII: 11538199-11538260 [+] UCSC Ensembl
Mir-36-P7 chrII: 11538324-11538389 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGUUAUUUUUAAGUGGGUCCCAGAGACCUUGGUGGUUUUUCUCUGCAGUGAUAGAUACUUCUAACAACUCGCUAUCACCGGGUGAAAAAUCACCUAGGUCUGGAGCCUCCUGCUCUUUUUUUGCUG
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Structure
        10             20        30        40         50        60   
AGUUAUUUUUAAGUGGG-----|  CAG      U           -    CA      GAUACUUCU 
                      UCC   AGACCU GGUGGUUUUUC UCUG  GUGAUA         \
                      AGG   UCUGGA CCACUAAAAAG GGGC  CACUAU         A
GUCGUUUUUUUCUCGUCCUCCG^  ---      U           U    --      CGCUCAACA 
    120       110          100        90        80          70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Wt Da Ea Mi Yo Yo
Star sequence

Cel-Mir-36-P7_5p*

mirBase accessionMIMAT0020770
Sequence
0- GGUGGUUUUUCUCUGCAGUGAUA -23
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Mature sequence

Cel-Mir-36-P7_3p

mirBase accessionMIMAT0000012
Sequence
44- UCACCGGGUGAAAAAUCACCUA -66
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Proposed targets microrna.org: MIMAT0000012
TargetScanWorm: cel-miR-41