MirGeneDB 2.1
MirGeneDB ID

Cel-Mir-36-P6

Family name MIR-36 (all species)
Seed CACCGGG
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-40
Paralogues Cel-Mir-36-P1  Cel-Mir-36-P2  Cel-Mir-36-P3  Cel-Mir-36-P4  Cel-Mir-36-P5  Cel-Mir-36-P7  Cel-Mir-36-P8 
Orthologues Bge-Mir-36  Cbr-Mir-36-o6  Cgi-Mir-36  Cte-Mir-36  Dma-Mir-36  Dpu-Mir-36  Isc-Mir-36  Npo-Mir-36  Tca-Mir-36 
Node of Origin (locus) C. elegans
Node of Origin (family) Protostomia
Genome context
(ce11)		 chrII: 11538199-11538260 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-36-P6)		 Mir-36-P1 chrII: 11537629-11537689 [+] UCSC Ensembl
Mir-36-P2 chrII: 11537732-11537794 [+] UCSC Ensembl
Mir-36-P3 chrII: 11537854-11537914 [+] UCSC Ensembl
Mir-36-P4 chrII: 11537949-11538011 [+] UCSC Ensembl
Mir-36-P5 chrII: 11538103-11538164 [+] UCSC Ensembl
Mir-36-P6 chrII: 11538199-11538260 [+] UCSC Ensembl
Mir-36-P7 chrII: 11538324-11538389 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGGUGUCUCCGAACCUCCUGUCCGCACCUCAGUGGAUGUAUGCCAUGAUGAUAAGAUAUCAGAAAUCCUAUCACCGGGUGUACAUCAGCUAAGGUGCGGGUACAGGUGCAUUUGAUAUCAAG
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Structure
        10          20        30        40        50        60 
UGGUGUCUCCGAACCUCC--|GU        C   G          A  A     AGAUAUC 
                    U  CCGCACCU AGU GAUGUAUGCC UG UGAUA       \
                    A  GGCGUGGA UCG CUACAUGUGG GC ACUAU       A
GAACUAUAGUUUACGUGGAC^UG        A   A          -  C     CCUAAAG 
120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Wt Da Ea Mi Yo Yo
Star sequence

Cel-Mir-36-P6_5p*
mirBase accessionMIMAT0020307
Sequence 
0- AGUGGAUGUAUGCCAUGAUGAUA -23
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Mature sequence

Cel-Mir-36-P6_3p
mirBase accessionMIMAT0000011
Sequence 
40- UCACCGGGUGUACAUCAGCUAA -62
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Proposed targets microrna.org: MIMAT0000011
TargetScanWorm: cel-miR-40