MirGeneDB 2.1

MirGeneDB ID

Cel-Mir-36-P4

Family name MIR-36 (all species)
Seed CACCGGG
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-38
Paralogues Cel-Mir-36-P1  Cel-Mir-36-P2  Cel-Mir-36-P3  Cel-Mir-36-P5  Cel-Mir-36-P6  Cel-Mir-36-P7  Cel-Mir-36-P8 
Orthologues Bge-Mir-36  Cbr-Mir-36-o4  Cgi-Mir-36  Cte-Mir-36  Dma-Mir-36  Dpu-Mir-36  Isc-Mir-36  Npo-Mir-36  Tca-Mir-36 
Node of Origin (locus) C. elegans
Node of Origin (family) Protostomia
Genome context
(ce11)
chrII: 11537949-11538011 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-36-P4)
Mir-36-P1 chrII: 11537629-11537689 [+] UCSC Ensembl
Mir-36-P2 chrII: 11537732-11537794 [+] UCSC Ensembl
Mir-36-P3 chrII: 11537854-11537914 [+] UCSC Ensembl
Mir-36-P4 chrII: 11537949-11538011 [+] UCSC Ensembl
Mir-36-P5 chrII: 11538103-11538164 [+] UCSC Ensembl
Mir-36-P6 chrII: 11538199-11538260 [+] UCSC Ensembl
Mir-36-P7 chrII: 11538324-11538389 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUCGUGGUUUCUCUGUGAGCCAGGUCCUGUUCCGGUUUUUUCCGUGGUGAUAACGCAUCCAAAAGUCUCUAUCACCGGGAGAAAAACUGGAGUAGGACCUGUGACUCAUUCCGAUUUCUGGAG
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Structure
        10        20          30         40        50        60 
CUCGUGGUUUCUCUGUGAGC--               -|       G        ACGCAUCC 
                      CAGGUCCUGUUCCGG UUUUUUCC UGGUGAUA        \
                      GUCCAGGAUGAGGUC AAAAGAGG GCCACUAU        A
GAGGUCUUUAGCCUUACUCAGU               A^       -        CUCUGAAA 
 120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Wt Da Ea Mi Yo Yo
Star sequence

Cel-Mir-36-P4_5p*

mirBase accessionMIMAT0020305
Sequence
0- UCCGGUUUUUUCCGUGGUGAUA -22
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Mature sequence

Cel-Mir-36-P4_3p

mirBase accessionMIMAT0000009
Sequence
41- UCACCGGGAGAAAAACUGGAGU -63
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Proposed targets microrna.org: MIMAT0000009
TargetScanWorm: cel-miR-38