| MirGeneDB ID | Xla-Mir-12477-P2 |
|---|
| Family name |
MIR-12477 (all species) |
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| Species |
African clawed frog (Xenopus laevis) |
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| MiRBase ID |
|
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| Paralogues |
Xla-Mir-12477-P1
|
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| Orthologues |
Mun-Mir-12477
Xtr-Mir-12477
|
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| Node of Origin (locus) |
X. laevis
|
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| Node of Origin (family) |
Amphibia
|
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Genome context
(GCF_001663975.1_XLA_v2) |
NW_016694819.1: 2276395-2276452 [-]
UCSC
Ensembl
|
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| Seed |
GAGGCUU |
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Precursor
(pre-Mir +30nt flank) |
UCUCUCAGGAGGAUACCAUUGGAGCUGCAUUGAGGCUUCCUACUUCAAGGCUGUGUUCUGACUCAUCCUAGAAGCUUGAAGCCUAGCUGUAUCUUCAACAGAGACACACAGGACUCUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UCUCUCAGGAGGAUACCA--| C UUG CUA A C UGUU
UUGGAG UGCA AGGCUUC CUUC AGG UG C
AACUUC AUGU UCCGAAG GAAG UCC AC U
AUCUCAGGACACACAGAGAC^ U CGA UUC A U UCAG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UGUG in loop |
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Tissue expression
|
|
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| Mature sequence |
Xla-Mir-12477-P2_5p |
| mirBase accession | None |
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| Sequence |
0- UGAGGCUUCCUACUUCAAGGCUG -23
Get sequence
|
|---|
| Star sequence |
Xla-Mir-12477-P2_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- UCCUAGAAGCUUGAAGCCUAGCU -58
Get sequence
|
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