| MirGeneDB ID | Tni-Novel-3 |
|---|
| Family name |
TNI-NOVEL-3 (all species) |
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| Species |
Pufferfish (Tetraodon nigroviridis) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
|
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| Node of Origin (locus) |
T. nigroviridis
|
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| Node of Origin (family) |
T. nigroviridis
|
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Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel) |
3: 13094716-13094775 [+]
UCSC
Ensembl
|
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| Seed |
AGCUGUU |
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Precursor
(pre-Mir +30nt flank) |
AUGACGUAGUUAUCGUGGCUUAUUCAGCUCUGGCUCUUUUGCUGCAGCUCGUACCAGUUUUGCAGCUGCAGCUGUUUCAGAAGAGUUUCAGAUCUUGAUGAGUCCAGCAAGGUGGUGCAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUGACGUAGUUAUCGUGG C C --| CU C CCAGUU
CUUAUU AG UCUG GCUCUUUUG GCAGCU GUA \
GAGUAG UC AGAC UGAGAAGAC UGUCGA CGU U
GACGUGGUGGAACGACCU U U UU^ UU - CGACGU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Tni-Novel-3_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UGGCUCUUUUGCUGCAGCUCGUA -23
Get sequence
|
|---|
| Mature sequence |
Tni-Novel-3_3p |
| mirBase accession | None |
|---|
| Sequence |
38- CAGCUGUUUCAGAAGAGUUUCA -60
Get sequence
|
|---|
