MirGeneDB 2.1

MirGeneDB ID

Tni-Novel-1

Family name TNI-NOVEL-1 (all species)
Seed CUCGCAG
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) T. nigroviridis
Node of Origin (family) T. nigroviridis
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
1: 14203636-14203691 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCUUCCGGCGGAAGGAUAUGCUUCGGGGCACCUCGGCUCUCGGCGACUCCUGUGACUGCGCGGACUCGCAGAGAGUCGGAGACUUUCCGCCGCUGGACGAGAAAAAGCUCGCCAU
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Structure
        10        20          30         40        50       
UGCUUCCGGCGGAAGGAUAU--  UU     CAC  -|       G    C   UGUGA 
                      GC  CGGGG   CU CGGCUCUC GCGA UCC     \
                      CG  GCCUU   GA GCUGAGAG CGCU AGG     C
UACCGCUCGAAAAAGAGCAGGU  CC     UCA  G^       A    C   CGCGU 
    110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Sp Sp Sp To
Star sequence

Tni-Novel-1_5p*

mirBase accessionNone
Sequence
0- ACCUCGGCUCUCGGCGACUCC -21
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Mature sequence

Tni-Novel-1_3p

mirBase accessionNone
Sequence
34- ACUCGCAGAGAGUCGGAGACUU -56
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