| MirGeneDB ID | Tni-Mir-7132-P1 |
|---|
| Family name |
MIR-7132 (all species) |
|---|
| Seed |
ACUUGGU |
|---|
| Species |
Pufferfish (Tetraodon nigroviridis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Dre-Mir-7132-P1
Gmo-Mir-7132-P1
Mal-Mir-7132-P1
|
|---|
| Node of Origin (locus) |
Clupeocephala
|
|---|
| Node of Origin (family) |
Clupeocephala
|
|---|
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel) |
Un_random: 7127190-7127247 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AACAGACAGCUCGGUUUGUCUCGGCUCCUUGACUUGGUCAAAGCUCCUCAGUGUGGGUACAAGUCCUGAGAAGUUCUGAACGAGUACAGGAUCUCUGAAGGGAACCUCUUUGGAUGGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AACAGACAGCUCGGUUUGUC C--| UG G A C UGUGGG
UCGG UCCU ACUUG UCA AGCU CUCAG U
AGUC AGGA UGAGC AGU UUGA GAGUC A
UGGUAGGUUUCUCCAAGGGA UCU^ CA A C A CUGAAC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Tni-Mir-7132-P1_5p |
| mirBase accession | None |
|---|
| Sequence |
0- GACUUGGUCAAAGCUCCUCAGU -22
Get sequence
|
|---|
| Star sequence |
Tni-Mir-7132-P1_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- UGAGAAGUUCUGAACGAGUACA -58
Get sequence
|
|---|
