| MirGeneDB ID | Tgu-Mir-2958 |
|---|
| Family name |
MIR-2958 (all species) |
|---|
| Species |
Zebra finch (Taeniopygia guttata) |
|---|
| MiRBase ID |
tgu-mir-2958
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
T. guttata
|
|---|
| Node of Origin (family) |
T. guttata
|
|---|
Genome context
(TaeGut1_add) |
21: 3490993-3491053 [+]
UCSC
Ensembl
|
|---|
| Seed |
GCUGGUG |
|---|
Precursor
(pre-Mir +30nt flank) |
ACCACCAGUGGGAGCCUGGCUGGAGCCUGAUGCUGGUGUAGAUGUGUCACAGUGCAUCCCCAGUGGCCACUCUGGCACCAACACCAGUUUUGGCCCCAGUCCCUGCUCCCUGCAGACACUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
ACCACCAGUGGGAGCCU---| A UGAU AGAU C CAUCCC
GGCUGG GCC GCUGGUGU GUGUCA AGUG \
CUGACC CGG UGACCACA CACGGU UCAC C
GUCACAGACGUCCCUCGUCC^ C UUU- AC-- C CGGUGA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Tgu-Mir-2958_5p |
| mirBase accession | MIMAT0014456 |
|---|
| Sequence |
0- UGCUGGUGUAGAUGUGUCACAGUG -24
Get sequence
|
|---|
| Star sequence |
Tgu-Mir-2958_3p* |
| mirBase accession | None |
|---|
| Sequence |
39- CUCUGGCACCAACACCAGUUUU -61
Get sequence
|
|---|
