| MirGeneDB ID | Tca-Mir-3849 |
|---|
| Family name |
MIR-3849 (all species) |
|---|
| Seed |
GACAUUU |
|---|
| Species |
Red flour beetle (Tribolium castaneum) |
|---|
| MiRBase ID |
tca-mir-3849
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
T. castaneum
|
|---|
| Node of Origin (family) |
T. castaneum
|
|---|
Genome context
(Tcas5.2) |
LG5: 5505646-5505710 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UCAUUUUGUUGUCGUAACUGUUCGAAAUGCUGACAUUUUAACCAUAGUGCUGUUGUUUAUAUUCAAAUUAAUAGCAUUGUGUUGGAAAUGUCGUCUUUUCGAACAAACUAGCACCGAUUAAGUUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UCAUUUUGUUGUCGUAAC--| UGC AAC UGUUUAUA
UGUUCGAAA UGACAUUUU CAUAGUGCUGU \
ACAAGCUUU GCUGUAAAG GUGUUACGAUA U
AUUGAAUUAGCCACGAUCAA^ UCU GUU AUUAAACU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
| Ad |
Ea |
Em |
Em |
Em |
Em |
Em |
Fe |
Fe |
Fe |
Fe |
Oo |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Tca-Mir-3849_5p |
| mirBase accession | MIMAT0018752 |
|---|
| Sequence |
0- UGACAUUUUAACCAUAGUGCUGU -23
Get sequence
|
|---|
| Star sequence |
Tca-Mir-3849_3p* |
| mirBase accession | MIMAT0018753 |
|---|
| Sequence |
42- AGCAUUGUGUUGGAAAUGUCGUC -65
Get sequence
|
|---|
