| MirGeneDB ID | Tca-Mir-3849 |
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| Family name |
MIR-3849 (all species) |
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| Species |
Red flour beetle (Tribolium castaneum) |
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| MiRBase ID |
tca-mir-3849
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
T. castaneum
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| Node of Origin (family) |
T. castaneum
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Genome context
(Tcas5.2) |
LG5: 5505646-5505710 [+]
Ensembl
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| Seed |
GACAUUU |
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Precursor
(pre-Mir +30nt flank) |
UCAUUUUGUUGUCGUAACUGUUCGAAAUGCUGACAUUUUAACCAUAGUGCUGUUGUUUAUAUUCAAAUUAAUAGCAUUGUGUUGGAAAUGUCGUCUUUUCGAACAAACUAGCACCGAUUAAGUUA
Get precursor sequence
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| Structure | 10 20 30 40 50 60
UCAUUUUGUUGUCGUAAC--| UGC AAC UGUUUAUA
UGUUCGAAA UGACAUUUU CAUAGUGCUGU \
ACAAGCUUU GCUGUAAAG GUGUUACGAUA U
AUUGAAUUAGCCACGAUCAA^ UCU GUU AUUAAACU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Ad |
Ea |
Em |
Em |
Em |
Em |
Em |
Fe |
Fe |
Fe |
Fe |
Oo |
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| Mature sequence |
Tca-Mir-3849_5p |
| mirBase accession | MIMAT0018752 |
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| Sequence |
0- UGACAUUUUAACCAUAGUGCUGU -23
Get sequence
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| Star sequence |
Tca-Mir-3849_3p* |
| mirBase accession | MIMAT0018753 |
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| Sequence |
42- AGCAUUGUGUUGGAAAUGUCGUC -65
Get sequence
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