| MirGeneDB ID | Tca-Mir-3049 |
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| Family name |
MIR-3049 (all species) |
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| Species |
Red flour beetle (Tribolium castaneum) |
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| MiRBase ID |
tca-mir-3049
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| Paralogues |
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| Orthologues |
Bge-Mir-3049
Dlo-Mir-3049
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| Node of Origin (locus) |
Neoptera
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| Node of Origin (family) |
Neoptera
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Genome context
(Tcas5.2) |
LG6: 4828785-4828843 [+]
Ensembl
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| Seed |
CGGGAAG |
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Precursor
(pre-Mir +30nt flank) |
GGCGCAGGGACAUGGGGGCGCCACAUGGGGUCGGGAAGACAGUUGCGGCGGAUUUCGUUUUUUCAAGUCCGUUCGCUGCAUUCCCAGCCCGGUGUCGUGCCGAGGCAGCAAGGGGGCGC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GGCGCAGGGACAUGGGG--| C G C GA UGC UCGUU
GCGC ACAU GGGU GGGAA CAGU GGCGGAUU \
CGUG UGUG CCCG CCCUU GUCG UUGCCUGA U
CGCGGGGGAACGACGGAGC^ C G A AC C-- ACUUU
110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Ad |
Ea |
Em |
Em |
Em |
Em |
Em |
Fe |
Fe |
Fe |
Fe |
Oo |
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| Mature sequence |
Tca-Mir-3049_5p |
| mirBase accession | MIMAT0018776 |
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| Sequence |
0- UCGGGAAGACAGUUGCGGCGGAUU -24
Get sequence
|
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| Star sequence |
Tca-Mir-3049_3p* |
| mirBase accession | MIMAT0018777 |
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| Sequence |
37- UCCGUUCGCUGCAUUCCCAGCC -59
Get sequence
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