MirGeneDB ID | Sto-Novel-2 |
Family name |
CHO-NOVEL-2 (all species) |
Seed |
UUUUUGC |
Species |
Cloudy Catshark (Scyliorhinus torazame) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Cmi-Novel-2
|
Node of Origin (locus) |
Chondrichthyes
|
Node of Origin (family) |
Chondrichthyes
|
Genome context (GCA_003427355_STO_add) |
BFAA01003193.1: 112829-112888 [-]
|
Precursor (pre-Mir +30nt flank) |
CACGACAUCACGCGUAAGCGGCGUGAUGACGUUUUUGCGACGCGAUGACGUUUUUCGACACAAGUUACAUCAUCACGACGCGAAUUACGUCAUCGCGUCGCGUGGUUACGAGACAGGAGA
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|
Structure | 10 20 30 40 50
CACGACAUCACGCGUAA-- U-| A C C UUUUCGA
GCGGCGUGAUGACGU UUUGCG CG GAUGA GU \
CGCUGCGCUACUGCA AAGCGC GC CUACU CA C
AGAGGACAGAGCAUUGGUG UU^ A A A UUGAACA
. 110 100 90 80 70 60 |
Deep sequencing |
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|
3' NTU |
Unknown
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Sto-Novel-2_5p |
mirBase accession | None |
Sequence |
0- GUUUUUGCGACGCGAUGACGU -21
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|
Star sequence |
Sto-Novel-2_3p* (predicted) |
mirBase accession | None |
Sequence |
38- AUCAUCACGACGCGAAUUACGU -60
Get sequence
|