| MirGeneDB ID | Sne-Novel-4 |
|---|
| Family name |
SNE-NOVEL-4 (all species) |
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| Species |
Seison (Seison nebaliae) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
S. nebaliae
|
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| Node of Origin (family) |
S. nebaliae
|
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Genome context
(S.nebaliae-strainB-GA2.2-3295Contigs_manual) |
k141_2644: 39258-39350 [-]
Ensembl
|
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| Seed |
GAGUAUU |
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Precursor
(pre-Mir +30nt flank) |
UACACAAUUCAUUUAUCCACUUAUUCUAAUUGAGUAUUCGCACUAGUAUUGAUUGAGGAAAUUAUGUAAUCAAUUAAUUCUUCCUUUAUUAAUGCCAGUUCAAUACAGUUGCGCUUACUCAAUUAAUAAGAAGAUCCUCAUCGCUCAUCGUCU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60 70
UACACAAUUCAUUUAUCCA----| UC UU - A UUGAGGAAAUUAUGUAAUCAAUU
CUUAU UAAUUGAGUA CGCA CU GUAUUGA \
GAAUA AUUAACUCAU GCGU GA CAUAACU A
UCUGCUACUCGCUACUCCUAGAA^ -- UC U - UGACCGUAAUUAUUUCCUUCUUA
150 140 130 120 110 100 90 80 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Sne-Novel-4_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGAGUAUUCGCACUAGUAUUGA -22
Get sequence
|
|---|
| Star sequence |
Sne-Novel-4_3p* |
| mirBase accession | None |
|---|
| Sequence |
71- AAUACAGUUGCGCUUACUCAAU -93
Get sequence
|
|---|
