| MirGeneDB ID | Sme-Let-7-P22 |
|---|
| Family name |
LET-7 (all species) |
|---|
| Seed |
GAGGUAG |
|---|
| Species |
Freshwater planarian (Schmidtea mediterranea) |
|---|
| MiRBase ID |
sme-let-7d
|
|---|
| Paralogues |
Sme-Let-7-P19a
Sme-Let-7-P19b
Sme-Let-7-P20a
Sme-Let-7-P20b
Sme-Let-7-P21
|
|---|
| Orthologues |
Aae-Let-7
Bge-Let-7
Bpl-Let-7
Cgi-Let-7
Cte-Let-7
Dan-Let-7
Dma-Let-7
Dme-Let-7
Dmo-Let-7
Dpu-Let-7
Dsi-Let-7
Dya-Let-7
Esc-Let-7
Hme-Let-7
Isc-Let-7
Lan-Let-7
Lgi-Let-7
Npo-Let-7
Obi-Let-7
Ovu-Let-7
Pfl-Let-7
Pmi-Let-7
Sko-Let-7
Spu-Let-7
Tca-Let-7
Xbo-Let-7
|
|---|
| Node of Origin (locus) |
S. mediterranea
|
|---|
| Node of Origin (family) |
Bilateria
|
|---|
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt) |
NNSW01000007_dd_Smes_g4_7: 6243474-6243532 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AAUAUUUAUUCUUCCUAUAUUCAUUUUACUAGAGGUAGUGAUUCAAAAAGUUAAUUUAACAUUUUGACUUUUUGAAUUAUUAUCUUUGAUAAAUGAUUGAAAGACAUCAUUUUAUUGUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AAUAUUUAUUCUUCCUA---| U UAC AAUUUA
UA UCAUUU UAGAGGUAGUGAUUCAAAAAGUU \
GU AGUAAA GUUUCUAUUAUUAAGUUUUUCAG A
AUGUUAUUUUACUACAGAAA^ U UA- UUUUAC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Ne |
Wh |
Wh |
Wh |
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| Mature sequence |
Sme-Let-7-P22_5p |
| mirBase accession | MIMAT0011225 |
|---|
| Sequence |
0- AGAGGUAGUGAUUCAAAAAGUU -22
Get sequence
|
|---|
| Star sequence |
Sme-Let-7-P22_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- CUUUUUGAAUUAUUAUCUUUGA -59
Get sequence
|
|---|
