| MirGeneDB ID | Sma-Mir-87-o32 |
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| Family name |
MIR-87 (all species) |
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| Species |
Blood fluke (Schistosoma mansoni) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Gsp-Mir-87
Sne-Mir-87
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| Node of Origin (locus) |
Protostomia
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| Node of Origin (family) |
Protostomia
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Genome context
(GCA_000237925.5_SM_V9_genomic) |
HE601626.3: 12868984-12869221 [-]
UCSC
Ensembl
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| Seed |
UGAGCAA |
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Precursor
(pre-Mir +30nt flank) |
UUUCAAUUUUAAUCUACCGAGAACUUGUACCCGCCUGUAACUAUGCUCAAACCAAAUAACGAUUAAACUUAUUGAGAAUUUUCUGAUUAAAUCAACAAAAAAAAGAAAAGAAAUAUUAUUCCAUCAAAACUAAUCGAUAUUCAAUGAAUUUACCAAAAAAUAAUCAAUUAUGAAUAUCAUUAGUGAGAAUAAUGUUUCUAUUCAGAAAAUUUUUCUCAAUUUUGUUUAAUUAUCUUCUUUUGAUUGGUGAGCAAAGUUUCAGGUGUGUCAACAUUCGGUUGAACAUCUUUAAUUGAUU
Get precursor sequence
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| Structure | 10 20 30 40 50 60 70 80 90 100 110 120 130 140
UUUCAAUUUUAAUCUAC----| AAC U C U A AA AAUAACGAUUAAACUUAUUGAGAAUUUUCUGAUUAAAUCAACAAAAAAAAGAAAAGAAAUAUUAUUCCAUCAAAACUAAUCGAUAUUCAAUGAA
CGAG UUG AC CGCCUG AACU UGCUC ACCA U
GCUU AAC UG GUGGAC UUGA ACGAG UGGU U
UUAGUUAAUUUCUACAAGUUG^ AC- - U U A -- UAGUUUUCUUCUAUUAAUUUGUUUUAACUCUUUUUAAAAGACUUAUCUUUGUAAUAAGAGUGAUUACUAUAAGUAUUAACUAAUAAAAAACCAU
290 280 270 260 250 240 230 220 210 200 190 180 170 160 150 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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Ce |
Ce |
Ce |
Eg |
Eg |
Eg |
Eg |
Eg |
Eg |
Mi |
Mi |
Sc |
Sc |
Sc |
Sm |
Sm |
Sp |
Sp |
Sp |
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| Star sequence |
Sma-Mir-87-o32_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- CCGCCUGUAACUAUGCUCAAACCA -24
Get sequence
|
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| Mature sequence |
Sma-Mir-87-o32_3p |
| mirBase accession | None |
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| Sequence |
216- GUGAGCAAAGUUUCAGGUGUGU -238
Get sequence
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