MirGeneDB 3.0

MirGeneDB ID

Sma-Mir-87-o32

Family name MIR-87 (all species)
Species Blood fluke (Schistosoma mansoni)
MiRBase ID
Paralogues
Orthologues Gsp-Mir-87  Sne-Mir-87 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(GCA_000237925.5_SM_V9_genomic)
HE601626.3: 12868984-12869221 [-] UCSC Ensembl
Seed UGAGCAA
Precursor
(pre-Mir +30nt flank)
UUUCAAUUUUAAUCUACCGAGAACUUGUACCCGCCUGUAACUAUGCUCAAACCAAAUAACGAUUAAACUUAUUGAGAAUUUUCUGAUUAAAUCAACAAAAAAAAGAAAAGAAAUAUUAUUCCAUCAAAACUAAUCGAUAUUCAAUGAAUUUACCAAAAAAUAAUCAAUUAUGAAUAUCAUUAGUGAGAAUAAUGUUUCUAUUCAGAAAAUUUUUCUCAAUUUUGUUUAAUUAUCUUCUUUUGAUUGGUGAGCAAAGUUUCAGGUGUGUCAACAUUCGGUUGAACAUCUUUAAUUGAUU
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Structure
        10            20        30        40        50        60        70        80        90       100       110       120       130       140         
UUUCAAUUUUAAUCUAC----|   AAC   U  C      U    A     AA    AAUAACGAUUAAACUUAUUGAGAAUUUUCUGAUUAAAUCAACAAAAAAAAGAAAAGAAAUAUUAUUCCAUCAAAACUAAUCGAUAUUCAAUGAA 
                     CGAG   UUG AC CGCCUG AACU UGCUC  ACCA                                                                                              U
                     GCUU   AAC UG GUGGAC UUGA ACGAG  UGGU                                                                                              U
UUAGUUAAUUUCUACAAGUUG^   AC-   -  U      U    A     --    UAGUUUUCUUCUAUUAAUUUGUUUUAACUCUUUUUAAAAGACUUAUCUUUGUAAUAAGAGUGAUUACUAUAAGUAUUAACUAAUAAAAAACCAU 
      290       280        270        260       250         240       230       220       210       200       190       180       170       160       150
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ce Ce Ce Eg Eg Eg Eg Eg Eg Mi Mi Sc Sc Sc Sm Sm Sp Sp Sp
Star sequence

Sma-Mir-87-o32_5p* (predicted)

mirBase accessionNone
Sequence
0- CCGCCUGUAACUAUGCUCAAACCA -24
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Mature sequence

Sma-Mir-87-o32_3p

mirBase accessionNone
Sequence
216- GUGAGCAAAGUUUCAGGUGUGU -238
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