MirGeneDB 2.1
MirGeneDB ID

Sha-Novel-16-P5

Family name SHA-NOVEL-16 (all species)
Seed AAACACU
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Novel-16-P1  Sha-Novel-16-P2a  Sha-Novel-16-P2b  Sha-Novel-16-P3  Sha-Novel-16-P4  Sha-Novel-16-P6  Sha-Novel-16-P7  Sha-Novel-16-P8  Sha-Novel-16-P9  Sha-Novel-16-P10  Sha-Novel-16-P11  Sha-Novel-16-P12  Sha-Novel-16-P13  Sha-Novel-16-P14  Sha-Novel-16-P15  Sha-Novel-16-P16  Sha-Novel-16-P17  Sha-Novel-16-P18  Sha-Novel-16-P19  Sha-Novel-16-P20a  Sha-Novel-16-P20b  Sha-Novel-16-P20c  Sha-Novel-16-P20d  Sha-Novel-16-P21  Sha-Novel-16-P22  Sha-Novel-16-P23  Sha-Novel-16-P24  Sha-Novel-16-P25  Sha-Novel-16-P26  Sha-Novel-16-P27a1  Sha-Novel-16-P27a2  Sha-Novel-16-P27b  Sha-Novel-16-P27c  Sha-Novel-16-P28  Sha-Novel-16-P29  Sha-Novel-16-P30 
Orthologues
Node of Origin (locus) S. harrisii
Node of Origin (family) S. harrisii
Genome context
(DEVIL_add)		 GL867614.1: 345883-345943 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGGCUGCGUUUUGAGCUGCUGAAGUCCCACUAAACACUCCGAAGCCACAGUGUUUGUAUUAUCAAUUGAACAAUGUGUCUCAGAGUGUAGUGGGCCCUUAGCCCUCACAUCAUCUUCCCUG
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Structure
        10          20        30        40        50        60 
AGGCUGCGUUUUGAGCU--|    AGU      AA      C  A C    G    UGUAUU 
                   GCUGA   CCCACU  ACACUC GA G CACA UGUU      A
                   CGAUU   GGGUGA  UGUGAG CU C GUGU ACAA      U
GUCCCUUCUACUACACUCC^    CCC      --      A  - U    A    GUUAAC 
 .       110       100        90          80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Novel-16-P5_5p
mirBase accessionNone
Sequence 
0- UAAACACUCCGAAGCCACAGUGUU -24
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Star sequence

Sha-Novel-16-P5_3p*
mirBase accessionNone
Sequence 
40- CAAUGUGUCUCAGAGUGUAGU -61
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